Entering edit mode
Hi. I am not able to load the Chipseeker package. I have installed in the following way and I keep having errors while loading and I do not know why.
BiocManager::install("ChIPseeker")
BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene")
BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")
library(ChIPseeker) # produces and error
Error: package or namespace load failed for 'ChIPseeker':
'TxDb.Hsapiens.UCSC.hg19.knownGene' is not exported from 'namespace: TxDb.Hsapiens.UCSC.hg19.knownGene'
Thank you in advance for any help on how to go about this.
session info:
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
Matrix products: default
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 LC_MONETARY=German_Germany.1252
[4] LC_NUMERIC=C LC_TIME=German_Germany.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.32.1 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[3] TxDb.Hsapiens.UCSC.hg38.knownGene_3.4.0 GenomicFeatures_1.34.8
[5] AnnotationDbi_1.44.0 GenomicRanges_1.34.0
[7] GenomeInfoDb_1.18.2 IRanges_2.16.0
[9] S4Vectors_0.20.1 cellrangerRkit_1.1.0
[11] Rmisc_1.5 plyr_1.8.4
[13] lattice_0.20-35 bit64_0.9-7
[15] bit_1.1-14 ggplot2_3.1.1
[17] RColorBrewer_1.1-2 Biobase_2.42.0
[19] BiocGenerics_0.28.0 Matrix_1.2-14
loaded via a namespace (and not attached):
Error in x[["Version"]] : subscript out of bounds
In addition: Warning message:
In FUN(X[[i]], ...) : DESCRIPTION von Paket 'digest' fehlt oder zerstört
Thank you Martin. After removing the digest package I still have the same error.
But presumably not the same warning "DESCRIPTION von Paket 'digest' fehlt oder zerstört" in the sessionInfo()?