Getting error in running maser 0.99.16

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Reza • 0

@reza-17253

Last seen 6.2 years ago

Hi everyone,

I'm using rMATS for alternative splicing analysis. I want to visualize the output by maser 0.99.16 but encountered the following error.

Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") :

  solving row 4462: range cannot be determined from the supplied arguments (too many NAs)

In addition: Warning messages:

1: In scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :

  EOF within quoted string

2: In scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :

  number of items read is not a multiple of the number of columns

Can anybody suggest me how to fix this error?

Thanks

maser R rMATs alternative splicing • 1.5k views

ADD COMMENT • link 6.2 years ago Reza • 0

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Hello kalak_555!

We believe that this post does not fit the main topic of this site.

rMATS isn't a Bioconductor package. Please contact the maintainer directly.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLY • link 6.2 years ago James W. MacDonald 67k

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Hi James,

I got the error in maser 0.99.16 that is a Bioconductor package. This package can be run for the output of rMATs.

Best regards

ADD REPLY • link 6.2 years ago Reza • 0

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