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following contributors:
9 years, 9 months ago
United States
A: Normalization of RNA-seq data, called remove unwanted variation (RUV), in DESeq2
9 years, 9 months ago
United States
A: discrepance in DESeq2 results with different design structures
9 years, 9 months ago
United States
[DESeq2] time series strain-specific differences over time
9 years, 9 months ago
United States
A: Mapping KEGG pathway names to IDs using KEGG.db package
9 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
A: Low percentage of assigned fragments with FeatureCounts
9 years, 10 months ago
Seattle, WA, United States
A: Calling coverage on GRanges object yields small negative values
9 years, 10 months ago
WEHI, Melbourne, Australia
A: Gene expression between two copies of same gene:use counts or RPKM or FPKM?
9 years, 10 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 10 months ago
Cambridge, UK
A: Diffbind dba.analyze Error in d$span : $ operator is invalid for atomic vectors
9 years, 10 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
9 years, 10 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 10 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
9 years, 10 months ago
United States
Using edgeR on pre-post treatment control design
9 years, 10 months ago
United States
A: [DESEQ2] How to access the normalized data of a DESeqDataSet
9 years, 10 months ago
EMBL Heidelberg
Intergenic coordinates with Genomic Feaures
9 years, 10 months ago
United States
Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis
9 years, 11 months ago
The city by the bay
A: Appropriate use of the function treat of the limma package
9 years, 11 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
9 years, 11 months ago
United States
A: How to specify 'contrast' in glmLRT command when treatments in design matrix are
9 years, 11 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
9 years, 11 months ago
The city by the bay
A: Queries regarding normalization methods for RNA sequencing data analysis
9 years, 11 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
9 years, 11 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 11 months ago
WEHI, Melbourne, Australia
A: limma - F-test for many condition
9 years, 11 months ago
United States
A: Cannot find function treatDGE() in package edgeR?
9 years, 11 months ago
Seattle, WA, United States
A: Missing mm10 in geneLenDataBase
9 years, 12 months ago
EMBL Heidelberg
A: fastqSampler and writeFastq in shortread package
10 years ago
United States
A: Differences when using voom on a design with or without intercept
10 years ago
United States
A: package ‘edgeR’ is not available (for R version 3.1.2)
10 years ago
Seattle, WA, United States
Algorithm description for matchPWM (Biostrings)
10 years ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
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