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following contributors:
6 years, 8 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years, 8 months ago
EMBL Heidelberg
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
6 years, 8 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
6 years, 8 months ago
European Union
Does anyone need to install an R package which is used by another package as importFrom(.,.)?
6 years, 8 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
6 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
6 years, 8 months ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
6 years, 8 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
6 years, 8 months ago
United States
A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
6 years, 8 months ago
The city by the bay
A: Building contrasts for combined treatment groups to compare to a control
6 years, 8 months ago
United States
A: calculate foldchange after rlogTransformation
6 years, 8 months ago
United States
A: Unable to install a Bioconductor package to local directory
6 years, 8 months ago
WEHI, Melbourne, Australia
A: TPM data Differential expression analysis
6 years, 9 months ago
United States
A: novice: building gene co-expression network using RNA-Seq data
6 years, 9 months ago
United States
A: How to check the read length for all the TCGA data samples in GDC?
6 years, 9 months ago
The city by the bay
A: edgeR: Choice of reference group in nested model
6 years, 9 months ago
United States
A: makeTxDbFromUCSC("hg19", "refGene") gives "not supported" error
6 years, 9 months ago
WEHI, Melbourne, Australia
A: Separate listing of up-regulated and down-regulated genes in edgeR DGE results.
6 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
A: Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
6 years, 9 months ago
United States
A: Convert Normalized RNA-Seq counts to TPM after Batch Correction
6 years, 9 months ago
United States
A: Understanding PureCN and its germline SNPs
6 years, 9 months ago
The city by the bay
A: Difficulty in finding DEG using TCGA data from FireBrowse
6 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
P values from Deseq Analysis
6 years, 9 months ago
Switzerland
A: Gvis: Adding colour and transparency to overlaid alignment tracks
6 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
A: Fitting Gamma GLMs for examining differential expression
6 years, 10 months ago
The city by the bay
A: edgeR cpm() function with and without log2
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Analysis of pathways using edgeR
6 years, 10 months ago
The city by the bay
A: How to find the degree of freedom, effect size and the variance of effect size f
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Difference between glmQLFTest and glmTreat in the EdgeR package
6 years, 10 months ago
United States
A: Normalized counts of DESeq2 affected by design formula?
6 years, 10 months ago
EMBL Heidelberg
A: converting ensembl transcript ID to ensemble gene: problem & missing values
6 years, 10 months ago
United States
A: convert Gene collection to gene list for camera function
6 years, 11 months ago
United States
A: Is it reasonable to run DESeq2 on only a subset of transcripts of the original r
6 years, 11 months ago
EMBL Heidelberg
A: Is there a way to tell biocLite() to install a Bioconductor package only if it i
6 years, 11 months ago
United States
A: DeSeq2 with three groups which approach to use? LRT or just do multiple pairwise
6 years, 11 months ago
United States
A: pkgDepTools does not consider LinkingTo: fields
6 years, 11 months ago
WEHI, Melbourne, Australia
A: Trouble with Tximport for edgeR
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