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Created An Answer That Has Been Accepted
Awarded 5038 times (see all awards). Earned by the
following contributors:
2 weeks, 3 days ago
Australia
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
2 weeks, 3 days ago
United States
Answer: biomaRt rnorvegicus_gene_ensembl not available anymore
2 weeks, 5 days ago
United States
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
3 weeks, 2 days ago
United States
Answer: clusterProfiler enrichGO on only T-cell related GO terms
3 weeks, 3 days ago
WEHI, Melbourne, Australia
Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
4 weeks ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
4 weeks ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
1 month ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
1 month ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
1 month ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
1 month, 1 week ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
1 month, 1 week ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
1 month, 1 week ago
Japan
Answer: Highly DE genes but small count difference within conditions
1 month, 1 week ago
United States
Answer: Highly DE genes but small count difference within conditions
1 month, 1 week ago
Germany
Answer: How to control batch effect if Group and batch are same?
1 month, 2 weeks ago
United States
Answer: ISO a solution to rank-order introns by transcript
1 month, 2 weeks ago
United States
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
1 month, 3 weeks ago
United States
Answer: Batch adjustment for cohort based RNA seq data
2 months, 1 week ago
United States
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
2 months, 1 week ago
United States
Answer: Should tSNE from biol. replicates look alike?
2 months, 2 weeks ago
United States
Answer: Size factor normalized counts for between sample comparisons - correct?
2 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: voom does not seem to properly correct for library size
2 months, 4 weeks ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
3 months ago
WEHI, Melbourne, Australia
Answer: using limma trend workflow in CAMERA
3 months ago
Germany
Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
3 months ago
WEHI, Melbourne, Australia
Answer: RUV - Does my data need further normalisation?
3 months ago
Germany
Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
3 months, 1 week ago
United States
Answer: How to Query Only SNPs from the biomaRt Variation Database
3 months, 1 week ago
United States
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
3 months, 2 weeks ago
United States
Answer: How to use specific size factors and average transcript lengths from tximport i
3 months, 2 weeks ago
Ireland
Answer: Deseq2 design formula and analysis with internal controls
3 months, 3 weeks ago
United States
Answer: A question occur when using DESeq2 on a complex design
3 months, 3 weeks ago
United States
Answer: Doubt about model in paired samples (intercept ?)
3 months, 4 weeks ago
United States
Answer: DeSeq2 Model Problems with species, tissue, and tissue status nesting
3 months, 4 weeks ago
United States
Answer: Parallel comparison of two DNAString objects with IUPAC ambiguities
4 months ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
4 months ago
United States
Answer: Limma comparing gene expression between base line and one treatment
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