Scholar
Created An Answer That Has Been Accepted
Awarded 5068 times (see all awards). Earned by the
following contributors:
2 weeks, 2 days ago
United States
Answer: Using TPM from tximport of Salmon output for singscore
2 weeks, 2 days ago
WEHI, Melbourne, Australia
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
3 weeks, 2 days ago
United States
Answer: Limma - Complex 2-way multi-level contrast with paired samples
3 weeks, 3 days ago
United States
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
4 weeks ago
United States
Answer: Surprising behavior for DEXseq dispersion estimate plot?
1 month ago
United States
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
1 month, 4 weeks ago
United States
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
2 months ago
United States
Answer: Find exact GRanges match keeping metadata columns
2 months ago
UPF, Barcelona, Spain
Answer: Unused arguments error without used arguments in GSVA?
2 months, 1 week ago
The city by the bay
Answer: Csaw normalization strategies - general inquiry
2 months, 2 weeks ago
United States
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago
United States
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
3 months, 2 weeks ago
Germany
Answer: Standardization of rlog transformed counts before PCA
3 months, 2 weeks ago
United States
Answer: Standardization of rlog transformed counts before PCA
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: RSubread output significantly different from bash Subread output
3 months, 3 weeks ago
The city by the bay
Answer: Running multiple KNN queries in parallel
3 months, 4 weeks ago
Germany
Answer: RSubread output significantly different from bash Subread output
4 months, 1 week ago
United States
Answer: Struggle with the replicates of epic array data
4 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Is it recommended to analyze different tissues together when using edgeR
4 months, 2 weeks ago
United States
Answer: preprocessIllumina error with EPICv2 array
4 months, 2 weeks ago
United States
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
4 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
4 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
5 months ago
Australia
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
5 months, 1 week ago
United States
Answer: biomaRt rnorvegicus_gene_ensembl not available anymore
5 months, 1 week ago
United States
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
5 months, 1 week ago
United States
Answer: Samples used for network inference in RegEnrich
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Analysis of 2*4 factorial design
5 months, 1 week ago
United States
Answer: clusterProfiler enrichGO on only T-cell related GO terms
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
5 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
5 months, 2 weeks ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
5 months, 3 weeks ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
5 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
5 months, 3 weeks ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
5 months, 3 weeks ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
5 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
5 months, 4 weeks ago
Japan
Answer: Highly DE genes but small count difference within conditions
5 months, 4 weeks ago
United States
Answer: Highly DE genes but small count difference within conditions
6 months ago
Germany
Answer: How to control batch effect if Group and batch are same?
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6