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Created An Answer That Has Been Accepted
Awarded 4960 times (see all awards). Earned by the
following contributors:
3 months ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
3 months, 1 week ago
Denver, University of Colorado Anschutz…
Answer: seqlevelsStyle() not working
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Longitudinal analysis in Limma
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: How to get normalized values for methylation counts in edgeR
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: voom with quality weights after RUV correction
3 months, 1 week ago
United States
Answer: TMM normalization after RUVg correction
3 months, 1 week ago
EMBL Heidelberg
Answer: create COMPOUND dataset (2 matrices) with rhdf5?
3 months, 1 week ago
United States
Answer: Continuous variable to identify responder genes using DESeq2
3 months, 2 weeks ago
United States
Answer: Need Help w/ Subset on GRangesList
3 months, 2 weeks ago
United States
Answer: Transcript level expression for CCLE
3 months, 2 weeks ago
Australia/Melbourne/Olivia Newton-John …
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Using limma for controlling age variable
3 months, 2 weeks ago
United States
Answer: DESeq2 analysis on time-series RNA experiment
3 months, 2 weeks ago
United States
Answer: Question about correction of confounders for EWAS
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
3 months, 4 weeks ago
United States
Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
4 months ago
United States
Answer: How to interpret log2fold values when using numeric contrasts in DESEQ2?
5 months ago
United States
Answer: Reduce single cell experiment size to use as reference for annotation with Singl
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: removeBatchEffect with non-linear model fit
5 months, 1 week ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Correct the batch effect in methylation analysis in R
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Filter genes by expression for voomLmFit
5 months, 2 weeks ago
United States
Answer: limma::voom vs edgeR::voomLmFit - when to use?
5 months, 3 weeks ago
Seattle, WA, United States
Answer: DataFrame Printing User Control
5 months, 3 weeks ago
EMBL Heidelberg
Answer: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl
5 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Is it appropriate to apply linear mixed models to Voom transformed data?
5 months, 3 weeks ago
United States
Answer: STRINGdb R package reference class instantiation with v12.0
5 months, 3 weeks ago
United States
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
6 months ago
WEHI, Melbourne, Australia
Answer: limma + voom combine voomWithQualityWeights and duplicateCorrelation
6 months ago
Germany
Answer: trying to add SingleR label to Seurat Object fails
6 months, 1 week ago
United States
Answer: DESeq2 unable to handle large count values
6 months, 1 week ago
Cambridge UK
Answer: read10xCounts for Cell Ranger 7 Output
6 months, 2 weeks ago
Seattle, WA, United States
Answer: Error in Gviz (actually, rtracklayer) | IdeogramTrack
6 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: DecideTest vs topTAGs in edgeR
6 months, 3 weeks ago
United States
Answer: Need help generating BSgenome and orgdb
6 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: [Bug] Segfault in edgeR::cpm
7 months ago
United States
Answer: Annotation Dbi Error: unable to find an inherited method for function 'x' for si
7 months, 1 week ago
WEHI, Melbourne, Australia
Answer: limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsist
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