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Created An Answer That Has Been Accepted
Awarded 5053 times (see all awards). Earned by the
following contributors:
4 months, 1 week ago
WEHI, Melbourne, Australia
Answer: RUV - Does my data need further normalisation?
4 months, 1 week ago
Germany
Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
4 months, 1 week ago
United States
Answer: How to Query Only SNPs from the biomaRt Variation Database
4 months, 1 week ago
United States
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
4 months, 2 weeks ago
United States
Answer: How to use specific size factors and average transcript lengths from tximport i
4 months, 2 weeks ago
Ireland
Answer: Deseq2 design formula and analysis with internal controls
4 months, 3 weeks ago
United States
Answer: A question occur when using DESeq2 on a complex design
4 months, 4 weeks ago
United States
Answer: Doubt about model in paired samples (intercept ?)
5 months ago
United States
Answer: DeSeq2 Model Problems with species, tissue, and tissue status nesting
5 months ago
United States
Answer: Parallel comparison of two DNAString objects with IUPAC ambiguities
5 months ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
5 months ago
United States
Answer: Limma comparing gene expression between base line and one treatment
5 months ago
WEHI, Melbourne, Australia
Answer: LIMMA 2x2 Factorial Design with Paired Samples
5 months ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
5 months, 1 week ago
Germany
Answer: Inconsistent nullp and goseq enrichment results across operating systems
5 months, 2 weeks ago
United States
Answer: Mapping Between GenBank ID's and Uniprot
5 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
6 months ago
United States
Answer: Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
6 months ago
United States
Answer: Create multiple DoparParams with different number of registered cores
6 months, 1 week ago
United States
Answer: DESeq2 returns results for group with just one replicate
6 months, 1 week ago
Australia
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
6 months, 1 week ago
Australia
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
6 months, 1 week ago
United States
Answer: Double normalising when using sva and deseq2
6 months, 2 weeks ago
Barcelona/Universitat Pompeu Fabra
Answer: Interpretation of GSVA with absRanking=TRUE
6 months, 3 weeks ago
United States
Answer: LRT, pairwise comparisons and p-value adjustment
6 months, 4 weeks ago
United States
Answer: Slightly different count plots from R and spreadsheet
7 months ago
USA, Los Angeles, USC
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
7 months ago
WEHI, Melbourne, Australia
Answer: How to correctly adjust for gender in edgeR
7 months, 2 weeks ago
Barcelona/Universitat Pompeu Fabra
Answer: Method to find pathways different between 2 groups
7 months, 3 weeks ago
United States
Answer: Help with error using camera() in limma
7 months, 3 weeks ago
St Louis, MO
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
7 months, 3 weeks ago
United States
Answer: Math expression in shapeCustom legend in EnhancedVolcano
7 months, 3 weeks ago
United States
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
7 months, 3 weeks ago
United States
Answer: How to retrieve gene ontology GO class from gene list?
7 months, 4 weeks ago
United States
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
7 months, 4 weeks ago
United States
Answer: DESeq2 - dispersion estimation when there is none
8 months ago
WEHI, Melbourne, Australia
Answer: Why p value inconsistent when using different number of pathway score?
8 months ago
Germany
Answer: Why p value inconsistent when using different number of pathway score?
8 months ago
EMBL Heidelberg
Answer: Error retrieving ensembl gene id using biomaRt...
8 months ago
WEHI, Melbourne, Australia
Answer: FilterByExpr low counts with small sample size
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