Popular Question

Created A Question With More Than 1,000 Views

Awarded 8521 times (see all awards). Earned by the following contributors:
L ▴ 50
2 years, 3 months ago
Germany
Convert an R data.frame to a bed file in R
spg • 0
2 years, 3 months ago
Canada
RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
Dunois • 0
2 years, 3 months ago
Universe
Confused about tximport-DESeq2 setup
nhaus ▴ 70
2 years, 3 months ago
Switzerland
Implementation of the "original" GSEA algorithm in R
andrebolerbarros ▴ 20
2 years, 3 months ago
Portugal
Warnings when using "ashr" in lfcshrinkage for DESeq2
Arctic • 0
2 years, 4 months ago
United States
Many NAs using TAIR IDs for plotting KEGG pathways using pathview
k.wickstrom • 0
2 years, 4 months ago
Norway
unable to access index for repository
komes42112 • 0
2 years, 4 months ago
Spain
Is there any guide for analyzing HTA (Human Transcriptome Array 2.0) microarrays?
Matthew Thornton ▴ 380
2 years, 4 months ago
USA, Los Angeles, USC
DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
minardsmitha ▴ 10
2 years, 4 months ago
United States
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
abhisek001 • 0
2 years, 4 months ago
India
question regarding installation of "enrichplot" with BiocManager
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Question about making Contrasts for comparisons and assignment of values
Abdul ▴ 20
2 years, 4 months ago
United States
Question on creating right design matrix in edgeR
Manmohit ▴ 10
2 years, 4 months ago
United States
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
yuhang • 0
2 years, 4 months ago
Hong Kong
Questions about non-model organisms gene enrichment analysis
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
How to interpret Histogram of average log2 CPM filtering in EdgeR?
Daniel E. Weeks ▴ 30
2 years, 4 months ago
Pittsburgh, Pennsylvania, United States…
SV4Vectors DataFrame bug with haven_labelled data
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Extracting specific comparisons after fitting model in EdgeR
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Error while reading rsem files in tximport
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Question on performing filtering by gene expression on a normalized matrix in limma?
David R ▴ 90
2 years, 4 months ago
European Union
question edgeR multifactorial design
Dario Strbenac ★ 1.6k
2 years, 4 months ago
Australia
Subset and Assign MultiAssayExperiment
Bogdan ▴ 670
2 years, 4 months ago
Palo Alto, CA, USA
normalization of ChIP-seq data by using the spike-ins or by using total library sizes
abhisek001 • 0
2 years, 4 months ago
India
How to write a script for identifying associate gene id
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Possibility of using TPM or FPKM values in edgeR for differential expression analysis?
abhisek001 • 0
2 years, 4 months ago
India
query regarding error in installation of "goseq" R bioconductor package
mohammedtoufiq91 ▴ 10
2 years, 4 months ago
United States
Unlog transformed data in DESeq2
Rob • 0
2 years, 4 months ago
United Kingdom
Mouse GSEA Analysis
Sara • 0
2 years, 4 months ago
United States
Quantification of Genes with RSubread::featureCounts() at exon-level vs gene-level?
Sara ▴ 20
2 years, 5 months ago
Germany
Too many differentially expressed miRNA with limma
Rob • 0
2 years, 5 months ago
United Kingdom
Filtering normalised counts
Sara • 0
2 years, 5 months ago
United States
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
mahes.muniandy • 0
2 years, 5 months ago
Helsinki
Time course experiment with limma voom
mohammedtoufiq91 ▴ 10
2 years, 5 months ago
United States
How to process and analyze Total RNA-Seq data?
gabriel.hoffman ▴ 170
2 years, 5 months ago
United States
Limma: posterior distribution of error variance
aguirre ▴ 20
2 years, 5 months ago
France
How to modify a compensation matrix in an fcs file
L ▴ 50
2 years, 5 months ago
Germany
Convert a bed file to bigBed with rtracklayer
Laia ▴ 10
2 years, 5 months ago
Belgium
DESeq2 design multi factor
marinaw ▴ 20
2 years, 5 months ago
Canada
DEGreport installation help
rocanja ▴ 60
2 years, 5 months ago
Australia
'combined score' calculation with singscore vs gsva
Sara ▴ 20
2 years, 5 months ago
Germany
Strange error with RMA during Affymetrix data analysis
shepherl 4.1k
2 years, 5 months ago
United States
Save the Date Bioc2023!
arantes_gabriel ▴ 10
2 years, 5 months ago
United Kingdom
Error using biomaRt
Rob • 0
2 years, 5 months ago
United Kingdom
Extracting gene lists per timepoints using DEGPPatterns package and LRT
ATpoint ★ 4.8k
2 years, 5 months ago
Germany
vst with output of edgeR::calcNormFactors
Peter Hickey ▴ 750
2 years, 5 months ago
WEHI, Melbourne, Australia
Registrations are now open for BioC Asia 2022
marinaw ▴ 20
2 years, 5 months ago
Canada
Outlier gene counts either killing or driving DEGs with DESeq2. PLEASE HELP.
shepherl 4.1k
2 years, 5 months ago
United States
Bioconductor 3.16 is Released!
shepherl 4.1k
2 years, 5 months ago
United States
List of Deprecated Packages for Bioc3.16
Laia ▴ 10
2 years, 5 months ago
Belgium
plotCounts to visualize variations of a specific genes along conditions
8,521 results • Page 7 of 171
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6