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Created A Comment With At Least 3 Up-Votes
Awarded 198 times (see all awards). Earned by the
following contributors:
7 years, 6 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 6 months ago
United States
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
7 years, 6 months ago
United States
C: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 6 months ago
United States
C: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 6 months ago
The city by the bay
Filtering lowly expressed genes in voom-limma analysis
7 years, 6 months ago
Wageningen University, Wageningen, the …
Testing for DE genes
7 years, 6 months ago
Wageningen University, Wageningen, the …
C: Testing for DE genes
7 years, 7 months ago
The city by the bay
Filtering lowly expressed genes in voom-limma analysis
7 years, 7 months ago
United States
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
7 years, 7 months ago
Seattle, WA, United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
7 years, 7 months ago
WEHI, Melbourne, Australia
C: How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
7 years, 7 months ago
WEHI, Melbourne, Australia
How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
7 years, 7 months ago
WEHI, Melbourne, Australia
How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
7 years, 7 months ago
WEHI, Melbourne, Australia
C: How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
7 years, 7 months ago
The city by the bay
C: limma blocking and including covariates
7 years, 8 months ago
WEHI, Melbourne, Australia
C: LIMMA paired analysis adjusting for two continuous variables - microarray data
7 years, 8 months ago
Seattle, WA, United States
C: Error in GRanges: could not find symbol "recursive" in environment of the generi
7 years, 8 months ago
The city by the bay
C: Adjust for multiple batches using combat
7 years, 9 months ago
United States
C: Weird error with raw data using function boxplot after importing Affymetrix Huma
8 years, 1 month ago
United States
C: Why the log fold change of some genes returned by edgeR is not compatible with t
8 years, 3 months ago
The city by the bay
C: Filtering lowly expressed genes in voom-limma analysis
8 years, 4 months ago
United States
C: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
8 years, 4 months ago
United States
C: WGCNA - Signed vs signed hybrid networks
8 years, 5 months ago
The city by the bay
C: Does DESeq2 or edgeR take care of random effect in the GLM
8 years, 5 months ago
United States
C: TopTable Problem : Unique Adj.P.Val which is near 1
8 years, 5 months ago
United States
C: TopTable Problem : Unique Adj.P.Val which is near 1
8 years, 7 months ago
The city by the bay
Normalization methodology in DESeq/DESeq2 vs edgeR
8 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
How to use removeBatchEffect for removing effect of multiple confounding variables
8 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
How to remove dublicate probesets matching to the same gene, after toptable in order to have a genelist without dublicate gene Symbols for further GO analysis ?
8 years, 7 months ago
United States
What is logFC and "B" in methylation analysis ??
8 years, 7 months ago
United States
TopTable Problem : Unique Adj.P.Val which is near 1
8 years, 7 months ago
United States
TopTable Problem : Unique Adj.P.Val which is near 1
8 years, 7 months ago
United States
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
8 years, 7 months ago
The city by the bay
C: Differing topTable() results with Limma with and without specifying coefficient
8 years, 7 months ago
Belgium
Problem making DESeq dataset; Error all variables in design formula must be columns in colData
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