Commentator
Created A Comment With At Least 3 Up-Votes
Awarded 198 times (see all awards). Earned by the
following contributors:
5 years, 6 months ago
Switzerland
C: Is it appropriate to use DESeq2 to analyse MinION data that's been mapped to a t
5 years, 6 months ago
WEHI, Melbourne, Australia
C: limma voom Mean-variance trend plot: x-axis?
5 years, 10 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
5 years, 10 months ago
United States
Best alternative annotation package to BiomaRt
5 years, 10 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
5 years, 10 months ago
Switzerland
Is it appropriate to use DESeq2 to analyse MinION data that's been mapped to a transcriptome?
5 years, 10 months ago
United States
Importing Gene Symbols with makeTxDbFromGFF
5 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
limma lmFit coefficients and p-values
6 years, 2 months ago
United States
C: Converting UniProt Identifier Into Representative Gene Symbol
6 years, 2 months ago
United States
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
6 years, 2 months ago
United States
C: extracting gene names, gene id and transcript id
6 years, 3 months ago
6 years, 4 months ago
Germany
C: Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
6 years, 4 months ago
The city by the bay
C: WARNING: remove set.seed usage in R code
6 years, 4 months ago
The city by the bay
C: [limma] Define contrasts for model with covariates
6 years, 5 months ago
United States
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
6 years, 6 months ago
United States
C: Eliminating repetitive calls to ExperimentHub
6 years, 7 months ago
The city by the bay
C: How does edgeR cpm function calculate log(CPM) values?
6 years, 7 months ago
The city by the bay
C: cameraPR vs geneSetTest and ROAST/CAMERA in general
6 years, 8 months ago
Zentrum für Molekularbiologie, Universi…
DESeq2: interaction term as in limma
6 years, 10 months ago
United States
C: Is there a conceptual difference between vst/rlog transforms and lfcShrink?
7 years, 1 month ago
United States
C: How is it possible to get a legend outside plotMDS?
7 years, 2 months ago
Australia
C: SGSeq: moving toward diffex from SGSeq analysis
7 years, 4 months ago
Seattle, WA, United States
C: Does package S4Vectors break ifelse?
7 years, 4 months ago
United States
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
7 years, 4 months ago
United States
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
7 years, 4 months ago
The city by the bay
limma: same data in different formats produces different DEG-analysis results
7 years, 4 months ago
WEHI, Melbourne, Australia
How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
7 years, 4 months ago
Seattle, WA, United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
7 years, 4 months ago
United States
Estimating and removing batch effects from rna-seq dataset
7 years, 4 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 4 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
7 years, 4 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 5 months ago
The city by the bay
limma: same data in different formats produces different DEG-analysis results
7 years, 5 months ago
Cambridge, UK
Diffbind - What exactly is a "consensus" peak set?
7 years, 5 months ago
The city by the bay
C: limma: same data in different formats produces different DEG-analysis results
7 years, 5 months ago
United States
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
7 years, 6 months ago
United States
C: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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