Commentator
Created A Comment With At Least 3 Up-Votes
Awarded 198 times (see all awards). Earned by the
following contributors:
7 months, 3 weeks ago
WEHI, Melbourne, Australia
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
9 months, 1 week ago
WEHI, Melbourne, Australia
Comment: Confusion about LFC using contrasts weights in EdgeR
10 months, 1 week ago
WEHI, Melbourne, Australia
Comment: RNAseq paired-sample differantial expression analysis with many samples
11 months, 3 weeks ago
WEHI, Melbourne, Australia
Comment: limma::voom vs edgeR::voomLmFit - when to use?
1 year, 3 months ago
WEHI, Melbourne, Australia
Comment: Custom design for scRNA DGE with pseudobulking
1 year, 6 months ago
United States
Comment: DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
1 year, 8 months ago
EMBL Heidelberg
Comment: A way to find which genome builds a package supports
1 year, 9 months ago
EMBL Heidelberg
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
1 year, 9 months ago
Spain
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
1 year, 9 months ago
United States
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
1 year, 9 months ago
Wageningen University, Wageningen, the …
Comment: MA plot
2 years, 1 month ago
United States
Comment: karyoploteR genome coverage plotting using BSgenome.TAIR10
2 years, 7 months ago
EMBL Heidelberg
Comment: biomaRt error unable to fix: need help troubleshooting
2 years, 7 months ago
United States
Comment: DESeq2: Is it possible to convert read counts to expression values via TPM and r
2 years, 11 months ago
Wageningen University, Wageningen, the …
Comment: what the test method for enrichGO in clusterProfiler?
3 years, 1 month ago
United States
Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_f
3 years, 2 months ago
United States
Comment: deseq2 machine sizing best practices for very large data set
3 years, 6 months ago
United States
Comment: Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve
3 years, 6 months ago
United States
Comment: Cannot install packages by BiocManager::install()
3 years, 9 months ago
WEHI, Melbourne, Australia
Comment: Limma Paired Analysis - Force intercept to 0
3 years, 10 months ago
3 years, 10 months ago
3 years, 11 months ago
United States
Comment: How to add a column to metadata in SummarizedExperiment for DESeq2 type objects?
4 years ago
United States
Comment: Annotating all SNVs in a genomic area, based on HG38 coordinates
4 years ago
Australia
C: Appropriate use of the function treat of the limma package
4 years ago
Republic of Ireland
C: how can I install to local dir using install_github
4 years ago
Republic of Ireland
C: batch effect correction for TCGA RNAseq harmonized data
4 years, 1 month ago
United States
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
4 years, 2 months ago
Republic of Ireland
C: deseq2 normalized data with heatmap
4 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
4 years, 6 months ago
The city by the bay
C: Removing cell cycle genes in large data set integration
4 years, 9 months ago
WEHI, Melbourne, Australia
C: Limma when to use zero intercept
4 years, 9 months ago
Barcelona/Universitat Pompeu Fabra
C: GSEABase - Map gene/transcript IDs to GOslims?
4 years, 9 months ago
United States
C: Inconsistent data within org.Sc.sgd.db package
5 years, 4 months ago
United States
C: Best alternative annotation package to BiomaRt
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