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7
votes
11
replies
5.7k
views
Comparing means of VST tranformed RNA-Seq counts in different groups of samples with boxplots
VST deseq2 boxplot rnaseq
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 80
0
votes
2
replies
5.7k
views
Comment: C: Comparing means of VST tranformed RNA-Seq counts in different groups of samples
6.9 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: Correct construction of multiple design matrix with limma in an agilent microarr
8.5 years ago Konstantinos Yeles ▴ 80
1
vote
2
replies
1.3k
views
Correct construction of multiple design matrix with limma in an agilent microarray dataset
limma multiple factor design multiple time points microarray design and contrast matrix
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 80
0
votes
1
reply
2.5k
views
Comment: C: Explanation of an ANOVA approach of multiple coefficients in limma with topTable
8.5 years ago Konstantinos Yeles ▴ 80
3
votes
3
replies
2.5k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 80
2
votes
5
replies
3.0k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 8.8 years ago by ▴ 110 • written 9.2 years ago by ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.8 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.8 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.8 years ago Konstantinos Yeles ▴ 80
6
votes
9
replies
1.9k
views
Interpretation of DE analysis results of an Illumina microarray dataset, and possible batch effect size problem
limma illumina microarray multifactorial design batch effect
updated 8.8 years ago by 52k • written 8.8 years ago by ▴ 80
0
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0
replies
2.6k
views
Comment: C: Comparison of DE lists from different datasets of same microarray platform
9.0 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
2.6k
views
Comment: C: Comparison of DE lists from different datasets of same microarray platform
9.0 years ago Konstantinos Yeles ▴ 80
0
votes
2
replies
2.6k
views
Answer: A: Comparison of DE lists from different datasets of same microarray platform
9.1 years ago Konstantinos Yeles ▴ 80
3
votes
6
replies
2.6k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
5.6k
views
Comment: C: Interpretation of confidence interval values for logFC returned from topTable fu
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
5.6k
views
Comment: C: Interpretation of confidence interval values for logFC returned from topTable fu
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
5.6k
views
Comment: C: Interpretation of confidence interval values for logFC returned from topTable fu
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
5.6k
views
Comment: C: Interpretation of confidence interval values for logFC returned from topTable fu
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
2
replies
5.6k
views
Comment: C: Interpretation of confidence interval values for logFC returned from topTable fu
9.1 years ago Konstantinos Yeles ▴ 80
8
votes
10
replies
5.6k
views
Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
limma topTable confidence interval effect size microarray
updated 9.1 years ago by 52k • written 9.1 years ago by ▴ 80
0
votes
1
reply
3.2k
views
Comment: C: Questions about complex design in limma regarding an agilent microarray dataset
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.2k
views
Comment: C: Questions about complex design in limma regarding an agilent microarray dataset
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
3.2k
views
Comment: C: Questions about complex design in limma regarding an agilent microarray dataset
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.2k
views
Comment: C: Questions about complex design in limma regarding an agilent microarray dataset
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.2k
views
Comment: C: Questions about complex design in limma regarding an agilent microarray dataset
9.1 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.2k
views
Comment: C: Questions about complex design in limma regarding an agilent microarray dataset
9.1 years ago Konstantinos Yeles ▴ 80
3
votes
12
replies
3.2k
views
Questions about complex design in limma regarding an agilent microarray dataset with multiple time points and different biological replicates
limma design matrix multiple time points agilent microarrays
updated 9.1 years ago by ★ 28k • written 9.1 years ago by ▴ 80
0
votes
1
reply
4.8k
views
Comment: C: Negative values after normalizing an agilent microarray dataset with limma
9.2 years ago Konstantinos Yeles ▴ 80
3
votes
3
replies
4.8k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 9.2 years ago by 68k • written 9.2 years ago by ▴ 80
0
votes
0
replies
2.9k
views
Comment: C: Annotation problem while quering hgug4112a.db with function select and duplicate
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
2
replies
2.9k
views
Comment: C: Annotation problem while quering hgug4112a.db with function select and duplicate
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
2.9k
views
Answer: A: Annotation problem while quering hgug4112a.db with function select and duplicate
9.2 years ago Konstantinos Yeles ▴ 80
3
votes
9
replies
2.9k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
2.9k
views
Comment: C: Annotation problem while quering hgug4112a.db with function select and duplicate
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
3.0k
views
Comment: C: Question on how to proceed and analyze 9 microarray datasets of two different pl
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.0k
views
Answer: A: Question on how to proceed and analyze 9 microarray datasets of two different pl
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
3.1k
views
Comment: C: Understanding and creating various comparisons with model.matrix in limma regard
9.3 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.1k
views
Comment: C: Understanding and creating various comparisons with model.matrix in limma regard
9.3 years ago Konstantinos Yeles ▴ 80
2
votes
6
replies
3.1k
views
Understanding and creating various comparisons with model.matrix in limma regarding microarrays
limma microarray multifactorial design duplicatecorrelation model.matrix
9.3 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
3.1k
views
Answer: A: Understanding and creating various comparisons with model.matrix in limma regard
9.3 years ago Konstantinos Yeles ▴ 80
2
votes
1
reply
1.8k
views
Normalization and background correction issues for specific Illumina data sets using limma R package
illumina bioconductor limma microarray normalization
updated 9.4 years ago by 52k • written 9.4 years ago by ▴ 80
0
votes
1
reply
1.6k
views
Answer: Answer: Problem with function combine regarding merging two data frames based on their c
9.4 years ago • updated 17 months ago Konstantinos Yeles ▴ 80
2
votes
3
replies
1.6k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
9.4 years ago • updated 17 months ago Konstantinos Yeles ▴ 80
2
votes
1
reply
4.6k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
9.5 years ago Konstantinos Yeles ▴ 80
95 results • Page 2 of 2
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