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5.2k
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Answer: A: When is centering and scaling needed before doing hierarchical clustering?
7.7 years ago chris86 ▴ 420
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1
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1.6k
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Comment: C: Some doubts about the limma package
7.7 years ago chris86 ▴ 420
22
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8
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5.2k
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Limma camera function never gives any differentially expressed gene sets
limma
updated 7.7 years ago by • 0 • written 9.8 years ago by ▴ 420
1
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1
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1.0k
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Paired t-test with 2 groups, how to I tell the DEGs between them?
limma
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 420
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0
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1.2k
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Comment: C: Batch effect between paired and single ended reads
7.8 years ago chris86 ▴ 420
3
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2
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1.2k
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Batch effect between paired and single ended reads
rnaseq
updated 7.8 years ago by 52k • written 7.8 years ago by ▴ 420
0
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1
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3.4k
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Answer: A: Which raw files (RNAseq) to download?
7.9 years ago chris86 ▴ 420
2
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0
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1.2k
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Answer: A: gene expression data analysis and batch effect methods
7.9 years ago chris86 ▴ 420
1
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0
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2.2k
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Answer: A: Outliers - to remove or to not remove that is the question
7.9 years ago chris86 ▴ 420
2
votes
1
reply
735
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How does it work with submitting a package to the bioconductor and doing the paper together?
bioconductor
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 420
2
votes
2
replies
921
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Calculating probability of getting xx genes past FDR10%
limma
updated 8.1 years ago by 52k • written 8.1 years ago by ▴ 420
1
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0
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5.0k
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Comment: C: illumina ht-12 v4 expression beadchip
8.2 years ago chris86 ▴ 420
1
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0
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1.3k
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Comment: C: Negative bionomial model (test) vs T test in EBseq or DEseq2
8.2 years ago chris86 ▴ 420
0
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2
replies
13k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
8.3 years ago chris86 ▴ 420
0
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0
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13k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
8.3 years ago chris86 ▴ 420
1
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0
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13k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
8.3 years ago chris86 ▴ 420
1
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0
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973
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Comment: C: Finding specific modules compared to consensus modules; cut-off?
8.3 years ago chris86 ▴ 420
0
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0
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4.4k
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Comment: C: GO enrichment comparison with other programs
8.3 years ago chris86 ▴ 420
0
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2
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4.4k
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Comment: C: GO enrichment comparison with other programs
8.3 years ago chris86 ▴ 420
0
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1
reply
1.2k
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Comment: C: Problem with Combat batch adjustment
8.4 years ago chris86 ▴ 420
0
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0
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1.5k
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Comment: C: ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the p
8.4 years ago chris86 ▴ 420
0
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0
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3.0k
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Comment: C: Test whether expression levels of two gene sets are significantly different
8.4 years ago chris86 ▴ 420
0
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0
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3.0k
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Comment: C: Test whether expression levels of two gene sets are significantly different
8.4 years ago chris86 ▴ 420
0
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2
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3.0k
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Answer: A: Test whether expression levels of two gene sets are significantly different
8.4 years ago chris86 ▴ 420
0
votes
0
replies
805
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Removal of variation in dataset associated with a continuous variable
limma microarray
8.5 years ago chris86 ▴ 420
2
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1
reply
1.5k
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Answer: A: i need to have a package for reads alignment to reference genome
8.5 years ago chris86 ▴ 420
0
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0
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2.7k
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Comment: C: How to combine replicates creating heatmap?
8.5 years ago chris86 ▴ 420
0
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0
replies
1.3k
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Comment: C: the output DEGs of limma analyzing RNA-seq data is just 1/3 of those by Tophat-C
8.5 years ago chris86 ▴ 420
0
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1
reply
1.1k
views
Comment: C: background correction for illumina array files
8.5 years ago chris86 ▴ 420
3
votes
3
replies
1.1k
views
background correction for illumina array files
limma microarray
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 420
0
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0
replies
1.9k
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Comment: C: Question about seed in ConsensusClusterPlus, can't repeat the result
8.5 years ago chris86 ▴ 420
0
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0
replies
1.3k
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Comment: C: How to analyze unannotated lncRNA using RNA-seq data?
8.5 years ago chris86 ▴ 420
1
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2
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1.3k
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Comment: C: How to analyze unannotated lncRNA using RNA-seq data?
8.5 years ago chris86 ▴ 420
0
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1
reply
964
views
Comment: C: Highly correlated, non-significant modules
8.6 years ago chris86 ▴ 420
0
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0
replies
1.3k
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Comment: C: ComplexHeatmap Legend labels
8.7 years ago chris86 ▴ 420
1
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1
reply
1.8k
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Comment: C: lumiR [Illumina] error from non-normalized data
8.7 years ago chris86 ▴ 420
0
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1
reply
10k
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Comment: C: Limma design with continuous and categorical covariates
8.7 years ago chris86 ▴ 420
0
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0
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1.7k
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Answer: A: csHeatmap - how to adjust order and number of genes displayed or change the size
8.7 years ago chris86 ▴ 420
0
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0
replies
958
views
Comment: C: How to obtain corrected p-value in BETR?
8.7 years ago chris86 ▴ 420
0
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0
replies
1.3k
views
Comment: C: using technical replicates to batch correct
8.7 years ago chris86 ▴ 420
0
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0
replies
980
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Comment: C: Any packages for barplot with specific features
8.7 years ago chris86 ▴ 420
0
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1
reply
1.3k
views
Comment: C: using technical replicates to batch correct
8.7 years ago chris86 ▴ 420
0
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0
replies
5.0k
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Comment: C: WGCNA differences two groups 10 replicates each group
8.7 years ago chris86 ▴ 420
0
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1
reply
5.0k
views
Comment: C: WGCNA differences two groups 10 replicates each group
8.7 years ago chris86 ▴ 420
0
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1
reply
5.0k
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Comment: C: WGCNA differences two groups 10 replicates each group
8.8 years ago chris86 ▴ 420
0
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0
replies
5.0k
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Comment: C: WGCNA differences two groups 10 replicates each group
8.8 years ago chris86 ▴ 420
0
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0
replies
1.3k
views
Comment: C: How to decorate complexheatmap?
8.8 years ago chris86 ▴ 420
0
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1
reply
1.8k
views
Comment: C: Method to be used in gsva() function
8.8 years ago chris86 ▴ 420
1
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0
replies
1.6k
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Comment: C: comparing transcripts expression between conditions
8.8 years ago chris86 ▴ 420
0
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1
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1.6k
views
Comment: C: comparing transcripts expression between conditions
8.8 years ago chris86 ▴ 420
179 results • Page 2 of 4
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