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9
votes
38
replies
8.4k
views
manipulate bedpe format files
GRanges bedpe structural variants rtracklayer
written 9.0 years ago by ▴ 200
0
votes
2
replies
918
views
TCGA counts to TPM from recount3 do not seem to right
recount3 TCGA RNASeq
updated 14 months ago by ★ 1.1k • written 15 months ago by ▴ 200
0
votes
0
replies
918
views
Comment: Comment: TCGA counts to TPM from recount3 do not seem to right
15 months ago tangming2005 ▴ 200
0
votes
0
replies
736
views
Comment: Comment: How do I select a subset of genes for functional enrichment(GO/KEGG) analysis fr
15 months ago tangming2005 ▴ 200
0
votes
0
replies
1.5k
views
Comment: Comment: tximport importer isoform abundance
20 months ago tangming2005 ▴ 200
0
votes
0
replies
1.5k
views
Comment: Comment: BiocParallel errors from muscat
2.8 years ago tangming2005 ▴ 200
3
votes
2
replies
1.5k
views
BiocParallel errors from muscat
BiocParallel muscat single-cell
2.8 years ago tangming2005 ▴ 200
0
votes
0
replies
1.5k
views
Comment: C: calculating TSS enrichment from ATACseq data
5.7 years ago tangming2005 ▴ 200
0
votes
0
replies
1.5k
views
Comment: C: calculating TSS enrichment from ATACseq data
5.7 years ago tangming2005 ▴ 200
0
votes
2
replies
1.5k
views
calculating TSS enrichment from ATACseq data
GenomicRanges Views ATACseq TSS
5.7 years ago tangming2005 ▴ 200
0
votes
0
replies
1.2k
views
Comment: C: DiffBind Change of Metadata once dba.counts have been called
6.1 years ago tangming2005 ▴ 200
0
votes
0
replies
5.2k
views
Comment: C: DiffBind differential binding normalization with different levels of binding
6.4 years ago tangming2005 ▴ 200
0
votes
1
reply
5.2k
views
Comment: C: DiffBind differential binding normalization with different levels of binding
6.5 years ago tangming2005 ▴ 200
32
votes
16
replies
19k
views
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
tximport deseq2 TPM RPKM rnaseq
updated 6.7 years ago by ▴ 20 • written 8.5 years ago by ▴ 200
0
votes
0
replies
1.8k
views
Comment: C: claariom.s.human annotation error
7.2 years ago tangming2005 ▴ 200
2
votes
2
replies
1.8k
views
claariom.s.human annotation error
affcoretools pd.clariom.s.human
updated 7.2 years ago by 67k • written 7.2 years ago by ▴ 200
0
votes
0
replies
2.3k
views
Comment: C: unlist a exons GRangeslist object and add a gene name column
7.2 years ago tangming2005 ▴ 200
0
votes
0
replies
2.3k
views
Comment: C: unlist a exons GRangeslist object and add a gene name column
7.2 years ago tangming2005 ▴ 200
6
votes
4
replies
2.3k
views
unlist a exons GRangeslist object and add a gene name column
granges grangeslist txdb.hsapiens.ucsc.hg19.knowngene
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 200
0
votes
0
replies
2.1k
views
Comment: C: POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
7.3 years ago tangming2005 ▴ 200
0
votes
1
reply
2.1k
views
Comment: C: POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
7.3 years ago tangming2005 ▴ 200
0
votes
1
reply
2.1k
views
Comment: C: POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
7.3 years ago tangming2005 ▴ 200
3
votes
10
replies
2.1k
views
POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
txdb.hsapiens.ucsc.hg19.knowngene
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 200
0
votes
0
replies
2.8k
views
Comment: C: reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not s
7.4 years ago tangming2005 ▴ 200
0
votes
1
reply
2.8k
views
Comment: C: reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not s
7.4 years ago tangming2005 ▴ 200
0
votes
6
replies
2.8k
views
reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not seem to be unique
TEQC
7.5 years ago • updated 7.4 years ago tangming2005 ▴ 200
0
votes
1
reply
2.8k
views
Comment: C: reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not s
7.4 years ago tangming2005 ▴ 200
27
votes
22
replies
21k
views
DESeq2 for ChIP-seq differential peaks
deseq2 deseq chipseq
updated 7.6 years ago by ▴ 120 • written 9.4 years ago by ▴ 200
0
votes
1
reply
3.5k
views
Comment: C: TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid f
7.8 years ago tangming2005 ▴ 200
0
votes
0
replies
3.5k
views
Comment: C: TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid f
7.8 years ago tangming2005 ▴ 200
0
votes
1
reply
3.5k
views
Comment: C: TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid f
7.8 years ago tangming2005 ▴ 200
0
votes
1
reply
3.5k
views
Comment: C: TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid f
7.8 years ago tangming2005 ▴ 200
0
votes
1
reply
3.5k
views
Comment: C: TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid f
7.8 years ago tangming2005 ▴ 200
0
votes
1
reply
3.5k
views
Comment: C: TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid f
7.8 years ago tangming2005 ▴ 200
4
votes
20
replies
3.5k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 7.8 years ago by ★ 6.6k • written 7.8 years ago by ▴ 200
0
votes
1
reply
2.1k
views
Comment: C: TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
7.9 years ago tangming2005 ▴ 200
0
votes
3
replies
2.1k
views
TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
TCGAbiolinks
7.9 years ago tangming2005 ▴ 200
0
votes
0
replies
2.6k
views
Comment: C: Extracting CNV data from CNVDetectionResult
8.2 years ago tangming2005 ▴ 200
0
votes
0
replies
1.8k
views
Comment: C: Detect CNVs in target sample
8.2 years ago tangming2005 ▴ 200
0
votes
0
replies
3.2k
views
Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
8.2 years ago tangming2005 ▴ 200
0
votes
0
replies
3.2k
views
Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
8.2 years ago tangming2005 ▴ 200
0
votes
1
reply
3.2k
views
Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
8.2 years ago tangming2005 ▴ 200
2
votes
6
replies
3.2k
views
TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
txdb.hsapiens.ucsc.hg19.knowngene
updated 8.2 years ago by 67k • written 8.2 years ago by ▴ 200
0
votes
1
reply
1.5k
views
Comment: C: DiffBind Error when dba.count on a pre-defined peak set
8.3 years ago tangming2005 ▴ 200
1
vote
3
replies
1.5k
views
DiffBind Error when dba.count on a pre-defined peak set
diffbind chipseq
updated 8.3 years ago by ★ 5.2k • written 8.3 years ago by ▴ 200
0
votes
1
reply
2.1k
views
Comment: C: TCGAbiolinks not downloading the 450k data
8.3 years ago tangming2005 ▴ 200
0
votes
1
reply
2.1k
views
Comment: C: TCGAbiolinks not downloading the 450k data
8.3 years ago tangming2005 ▴ 200
0
votes
2
replies
2.1k
views
Comment: C: TCGAbiolinks not downloading the 450k data
8.3 years ago tangming2005 ▴ 200
0
votes
1
reply
4.4k
views
Comment: C: AnnotationHub corrupt database
8.3 years ago tangming2005 ▴ 200
0
votes
1
reply
4.4k
views
Comment: C: AnnotationHub corrupt database
8.3 years ago tangming2005 ▴ 200
124 results • Page 1 of 3
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