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Comment: Comment: Does hashedDrops support 'imbalanced' combinations of HTOs?
3.8 years ago Aaron Lun ★ 28k
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1.5k
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Comment: Comment: Does hashedDrops support 'imbalanced' combinations of HTOs?
3.8 years ago Aaron Lun ★ 28k
1
vote
1
reply
1.5k
views
Answer: Answer: Does hashedDrops support 'imbalanced' combinations of HTOs?
3.8 years ago Aaron Lun ★ 28k
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0
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2.1k
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Comment: Comment: DE Analysis on Scran-Normalized Counts
3.8 years ago Aaron Lun ★ 28k
1
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1
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2.1k
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Comment: Comment: DE Analysis on Scran-Normalized Counts
3.8 years ago Aaron Lun ★ 28k
4
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2.1k
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Answer: Answer: DE Analysis on Scran-Normalized Counts
3.8 years ago Aaron Lun ★ 28k
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0
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2.6k
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Answer: Answer: SingleR and SCTransform
3.8 years ago Aaron Lun ★ 28k
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1
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2.5k
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Comment: Comment: SingleCellExperiment package: storing reducedDims metadata
3.8 years ago Aaron Lun ★ 28k
3
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1
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2.7k
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Answer: Answer: Merging only those samples sequenced over multiple batches - scRNA-seq
3.8 years ago Aaron Lun ★ 28k
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2
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2.5k
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Answer: Answer: SingleCellExperiment package: storing reducedDims metadata
3.8 years ago Aaron Lun ★ 28k
0
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1
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2.5k
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Comment: Comment: SingleCellExperiment package: storing reducedDims metadata
3.8 years ago Aaron Lun ★ 28k
1
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1.2k
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Answer: Answer: Number of non-empty drops returned by emptyDrops() depends on value of test.ambi
3.8 years ago Aaron Lun ★ 28k
0
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1
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1.7k
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Answer: Answer: Error coercing LowRankMatrix to dgCMatrix
3.8 years ago Aaron Lun ★ 28k
0
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1
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2.3k
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Answer: Answer: How to filter cells for scRNA-seq analysis based on expression level of surface
3.8 years ago Aaron Lun ★ 28k
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0
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2.1k
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Comment: Comment: 10X FeatureBarcode producing too many "cells"
3.9 years ago Aaron Lun ★ 28k
1
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1
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2.1k
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Answer: Answer: 10X FeatureBarcode producing too many "cells"
3.9 years ago Aaron Lun ★ 28k
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0
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2.8k
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Comment: Comment: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
3.9 years ago Aaron Lun ★ 28k
1
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1
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2.8k
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Answer: Answer: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
3.9 years ago Aaron Lun ★ 28k
2
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1
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1.9k
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Answer: Answer: SingleCellExperiment and SingleR for identifying T cell subsets
3.9 years ago Aaron Lun ★ 28k
0
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1
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1.7k
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Answer: Answer: Removal of cell cycle effect using batchelor::regressBatches() and proper usage
4.0 years ago Aaron Lun ★ 28k
1
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1
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2.4k
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Answer: Answer: Error when converting Seurat to SingleCellExperiment
4.0 years ago Aaron Lun ★ 28k
0
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0
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935
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Answer: Answer: DropletUtils::swappedDrops - Kallisto instead of CellRanger?
4.0 years ago Aaron Lun ★ 28k
1
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1.2k
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Answer: Answer: Combining treatment and control batches for analysis
4.0 years ago Aaron Lun ★ 28k
0
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0
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1.0k
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Answer: Answer: improving running time of runNMF
4.0 years ago Aaron Lun ★ 28k
2
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2
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3.2k
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Answer: Answer: How to run runNMF in parallel?
4.0 years ago Aaron Lun ★ 28k
2
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0
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1.3k
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Comment: Comment: iSEE - Custom Panel
4.0 years ago Aaron Lun ★ 28k
0
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1
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3.6k
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Comment: Comment: Spike-in normalization in EdgeR
4.1 years ago Aaron Lun ★ 28k
1
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1
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3.6k
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Answer: Answer: Spike-in normalization in EdgeR
4.1 years ago Aaron Lun ★ 28k
1
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0
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1.1k
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Answer: Answer: scran::computeSumFactors with single-cell ATAC-seq data
4.1 years ago Aaron Lun ★ 28k
0
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1
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1.7k
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Comment: Comment: SingleR Error in getMethod(generic, "ANY")
4.1 years ago Aaron Lun ★ 28k
0
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0
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2.7k
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Answer: Answer: What lengths are used to calculate TPM in "scater" package
4.1 years ago Aaron Lun ★ 28k
1
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0
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2.3k
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Comment: Comment: emptyDrops identified less non-empty cells with lower total UMI counts?
4.1 years ago Aaron Lun ★ 28k
1
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1
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1.7k
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Answer: A: SingleR Error in getMethod(generic, "ANY")
4.1 years ago Aaron Lun ★ 28k
1
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1
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3.0k
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Answer: A: csaw for ATAC, quantitation of Tn5 insertion sites only
4.1 years ago Aaron Lun ★ 28k
3
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3
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2.0k
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Comment: C: Running NMF for single cell
4.1 years ago Aaron Lun ★ 28k
1
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0
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1.6k
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Answer: A: Does SingleR return output for every cell it's given or only those that it can p
4.1 years ago Aaron Lun ★ 28k
1
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2
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2.5k
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Comment: C: Discarding ambient RNA using estimateAmbience
4.2 years ago Aaron Lun ★ 28k
1
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2
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2.5k
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Answer: A: Discarding ambient RNA using estimateAmbience
4.2 years ago Aaron Lun ★ 28k
0
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0
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1.8k
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Comment: C: problem recasting InteractionSet into a DGEList
4.2 years ago Aaron Lun ★ 28k
2
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0
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1.4k
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Answer: A: normOffsets in csaw
4.2 years ago Aaron Lun ★ 28k
1
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0
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2.2k
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Answer: A: findMarkers() {scran} doesn't really find markers
4.2 years ago Aaron Lun ★ 28k
0
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0
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3.1k
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Comment: C: Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
4.2 years ago Aaron Lun ★ 28k
0
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2
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3.1k
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Answer: A: Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
4.2 years ago Aaron Lun ★ 28k
1
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0
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1.4k
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Answer: A: Biological replicates in single cell experiments DE
4.2 years ago Aaron Lun ★ 28k
0
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1
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3.1k
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Comment: C: Cluster location in UMAP using SingleCellExperiment and SingleR
4.2 years ago Aaron Lun ★ 28k
0
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1
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1.4k
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Answer: A: Error in csaw::windowCounts when using readParam
4.2 years ago Aaron Lun ★ 28k
0
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0
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1.8k
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Comment: C: problem recasting InteractionSet into a DGEList
4.2 years ago Aaron Lun ★ 28k
0
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0
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1.6k
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Answer: A: Raw counts for reference dataset in single cell rnaseq
4.2 years ago Aaron Lun ★ 28k
0
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0
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642
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Answer: A: Custom dispersion estimate DESeq2
4.2 years ago Aaron Lun ★ 28k
0
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1
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1.8k
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Answer: A: problem recasting InteractionSet into a DGEList
4.2 years ago Aaron Lun ★ 28k
2,865 results • Page 2 of 58
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