Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.5k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
12.6 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.4k
views
Answer: A: distanceToNearest for GRanges?
12.6 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
2.0k
views
Comment: C: How to convert from IRanges(List) to Rle(List)
12.7 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.5k
views
Answer: A: load a TranscriptDb object in another R session?
12.7 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
2.1k
views
Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
12.7 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
2.1k
views
Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
12.7 years ago Malcolm Cook ★ 1.6k
1
vote
1
reply
1.1k
views
Answer: A: distanceToNearest for GRanges?
12.7 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.7k
views
Answer: A: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
12.7 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.1k
views
Comment: C: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
12.8 years ago Malcolm Cook ★ 1.6k
0
votes
3
replies
1.1k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures Cancer Organism biomaRt GenomicFeatures
updated 12.8 years ago by ▴ 660 • written 12.8 years ago by ★ 1.6k
0
votes
0
replies
1.4k
views
BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute fr…
TranscriptDb biomaRt GenomicFeatures TranscriptDb biomaRt GenomicFeatures
12.8 years ago Malcolm Cook ★ 1.6k
0
votes
3
replies
1.8k
views
GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR i…
biomaRt biomaRt
updated 12.8 years ago by ▴ 660 • written 12.8 years ago by ★ 1.6k
0
votes
1
reply
1.3k
views
error "Too many pushAbortHandlers, can only handle 11" while exporting bedGraph/bigWig using rtracklayer from Bioconductor
rtracklayer rtracklayer
updated 12.8 years ago by ★ 11k • written 12.8 years ago by ★ 1.6k
0
votes
0
replies
1.4k
views
Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
12.8 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.4k
views
Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
12.8 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.4k
views
Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
12.8 years ago Malcolm Cook ★ 1.6k
0
votes
5
replies
1.4k
views
FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt biomaRt
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ★ 1.6k
0
votes
0
replies
1.1k
views
GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt biomaRt
12.8 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
2.3k
views
Comment: C: GRanges setdiff With Features on Both Strands
12.9 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
2.3k
views
Comment: C: GRanges setdiff With Features on Both Strands
12.9 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.5k
views
Comment: C: GenomicFeatures makeTranscriptDbFromBiomart failure
12.9 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.2k
views
Comment: C: rtracklayer laying a track
12.9 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
3.0k
views
Comment: C: Access to archived versions of Ensembl with biomaRt
12.9 years ago Malcolm Cook ★ 1.6k
0
votes
5
replies
1.5k
views
GenomicFeatures makeTranscriptDbFromBiomart failure
updated 12.9 years ago by 16k • written 12.9 years ago by ★ 1.6k
0
votes
2
replies
1.2k
views
biomaRt access to ensemble genomes 11 fungi_mart_11
genomes genomes
updated 13.0 years ago by ▴ 60 • written 13.0 years ago by ★ 1.6k
0
votes
0
replies
1.2k
views
Comment: C: biomaRt access to ensemble genomes 11 fungi_mart_11
13.0 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
12k
views
Comment: C: GRanges - reduce() function
13.0 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.1k
views
Answer: A: "internal equal" overlap mode for GRangesList
13.1 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.7k
views
Comment: C: HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
13.2 years ago Malcolm Cook ★ 1.6k
0
votes
3
replies
1.7k
views
HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
GO BSgenome BSgenome GO BSgenome BSgenome
updated 13.2 years ago by 16k • written 13.2 years ago by ★ 1.6k
0
votes
1
reply
7.8k
views
Comment: C: rtracklayer gff import
13.6 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.1k
views
Comment: C: Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
13.7 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.1k
views
Comment: C: Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
13.7 years ago Malcolm Cook ★ 1.6k
0
votes
5
replies
1.1k
views
Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 1.6k
0
votes
0
replies
1.6k
views
Comment: C: SNP retrieval between two mouse strains
13.7 years ago Malcolm Cook ★ 1.6k
0
votes
2
replies
1.6k
views
Comment: C: SNP retrieval between two mouse strains
13.7 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.9k
views
Comment: C: Mapping genomic coordinates to transcript coordinates? (revived)
13.8 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
959
views
Mapping genomic coordinates to transcript coordinates? (revived)
GenomicFeatures GenomicFeatures
updated 13.8 years ago by ▴ 90 • written 13.8 years ago by ★ 1.6k
0
votes
0
replies
1.7k
views
Comment: C: extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
13.8 years ago Malcolm Cook ★ 1.6k
0
votes
2
replies
1.7k
views
extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
TranscriptDb biomaRt TranscriptDb biomaRt
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ★ 1.6k
0
votes
0
replies
2.1k
views
Answer: A: GFF3 format from ucsc
19.3 years ago Malcolm Cook ★ 1.6k
191 results • Page 4 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6