Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.8k
views
Comment: Comment: What lengths are used to calculate TPM in "scater" package
4.3 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.7k
views
Comment: C: Obtaining Comments From VCF Header
4.5 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
858
views
Expected Output for Promoters Used for GRangesList
GenomicRanges
4.5 years ago Dario Strbenac ★ 1.5k
2
votes
4
replies
1.7k
views
Obtaining Comments From VCF Header
VariantAnnotation VCFHeader
written 4.6 years ago by ★ 1.5k
0
votes
0
replies
1.7k
views
Comment: C: Import or Subset VCF PASS Variants
4.8 years ago Dario Strbenac ★ 1.5k
3
votes
2
replies
1.7k
views
Import or Subset VCF PASS Variants
VariantAnnotation subset ScanVcfParam
updated 4.8 years ago by 25k • written 4.8 years ago by ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.0 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
2.4k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.0 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.0 years ago Dario Strbenac ★ 1.5k
0
votes
2
replies
2.4k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.0 years ago Dario Strbenac ★ 1.5k
2
votes
2
replies
810
views
Recommended Read Support Filter for Breakends
StructuralVariantAnnotation
updated 5.3 years ago by ▴ 40 • written 5.4 years ago by ★ 1.5k
1
vote
1
reply
4.0k
views
Answer: A: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
5.3 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.2k
views
Comment: C: Accounting for Gene Set Overlaps in Goana and Kegga Results
5.5 years ago Dario Strbenac ★ 1.5k
2
votes
3
replies
1.2k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma pathway
updated 5.5 years ago by ▴ 280 • written 5.5 years ago by ★ 1.5k
5
votes
11
replies
4.7k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils TCGAbiolinks GenomicDataCommons
updated 5.6 years ago by 700 • written 5.6 years ago by ★ 1.5k
1
vote
4
replies
4.7k
views
Comment: C: Matching TCGA Aliquot ID to UUID or Barcode
5.6 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: C: rbind VCF Two Objects Column Names Error
5.6 years ago Dario Strbenac ★ 1.5k
2
votes
1
reply
1.3k
views
Answer: A: How can I overcome the error of "No residual degrees of freedom in linear model
5.6 years ago Dario Strbenac ★ 1.5k
0
votes
3
replies
1.3k
views
rbind VCF Two Objects Column Names Error
VariantAnnotation VCF
5.7 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.5k
views
Comment: C: Mimic Counting of HTSeq-count Using countOverlaps
5.7 years ago Dario Strbenac ★ 1.5k
4
votes
4
replies
1.5k
views
Mimic Counting of HTSeq-count Using countOverlaps
GenomicAlignments countOverlaps
updated 5.7 years ago by 25k • written 5.7 years ago by ★ 1.5k
0
votes
1
reply
1.4k
views
Comment: C: RNA-seq Statstical Models and Transcriptional Amplification
5.9 years ago Dario Strbenac ★ 1.5k
3
votes
4
replies
1.4k
views
RNA-seq Statstical Models and Transcriptional Amplification
edgeR DESeq2 Transcriptional Amplification
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ★ 1.5k
0
votes
1
reply
1.5k
views
Comment: C: Paired analysis (tumor vs normal) at three different conditions with EdgeR
5.9 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.3k
views
Comment: C: qQCReport Missing Plots Described in Documentation
5.9 years ago Dario Strbenac ★ 1.5k
1
vote
4
replies
1.3k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 5.9 years ago by ▴ 400 • written 5.9 years ago by ★ 1.5k
2
votes
0
replies
2.6k
views
Answer: A: Difference in TCGA RNAseq expression values between GDC harmonized and legacy da
6.2 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
646
views
Comment: C: How to monitor the performance of MS-based omics data?
6.3 years ago Dario Strbenac ★ 1.5k
6
votes
4
replies
9.1k
views
Converting UniProt Identifier Into Representative Gene Symbol
UniProt.ws
updated 2.1 years ago by 700 • written 6.4 years ago by ★ 1.5k
2
votes
1
reply
1.3k
views
Answer: A: Looking for code showing how estimateDispersions works.
6.5 years ago Dario Strbenac ★ 1.5k
1
vote
1
reply
1.2k
views
Mean-Variance Plot for Normalised Counts
EDASeq meanVarPlot
updated 6.6 years ago by ▴ 980 • written 6.6 years ago by ★ 1.5k
0
votes
1
reply
969
views
meanVarPlot Ignores Sample Total Count Differences
EDASeq meanVarPlot
6.6 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.4k
views
Comment: C: Non-Redundant Edges in Connected Components
6.7 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.4k
views
Comment: C: Non-Redundant Edges in Connected Components
6.7 years ago Dario Strbenac ★ 1.5k
1
vote
4
replies
1.4k
views
Non-Redundant Edges in Connected Components
RBGL
updated 6.7 years ago by 16k • written 6.7 years ago by ★ 1.5k
1
vote
0
replies
1.5k
views
Answer: A: Cannot install AUCell 1.2.2
6.7 years ago Dario Strbenac ★ 1.5k
1
vote
1
reply
1.1k
views
Recommendations for Protein Network Data Structure
AnnotationDbi Bimap Interactome
6.7 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
3.9k
views
Comment: C: featureCounts taking 4-10 hours per BAM file?
6.8 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
2.3k
views
Comment: C: How to handle multi-TSS genes in Repitools?
6.9 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
2.3k
views
Comment: C: How to handle multi-TSS genes in Repitools?
6.9 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.1k
views
Answer: A: Splicing analysis with ASpli
6.9 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
2.0k
views
Comment: C: No BAM option in readAligned from the ShortRead package
7.0 years ago Dario Strbenac ★ 1.5k
2
votes
1
reply
2.0k
views
Answer: A: No BAM option in readAligned from the ShortRead package
7.0 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.6k
views
Comment: C: Normalise counts when tumour samples have normal tissue contamination.
7.0 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.2k
views
Answer: A: RUVnormalize- How to output a corrected expression matrix without negative value
7.1 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.8k
views
Comment: C: Changing SVM-Kernal in geNetClassifier function
7.2 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.8k
views
Answer: A: Changing SVM-Kernal in geNetClassifier function
7.2 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.6k
views
Comment: C: Differential gene expression of longitudinal data
7.3 years ago Dario Strbenac ★ 1.5k
8
votes
3
replies
2.0k
views
Reproducibility of MultiDataSet Comparison
MultiDataSet MultiAssayExperiment
updated 7.4 years ago by ★ 1.1k • written 7.4 years ago by ★ 1.5k
2
votes
0
replies
1.3k
views
Comment: C: Why does total unique map not equal to library size?
7.4 years ago Dario Strbenac ★ 1.5k
281 results • Page 2 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6