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Answer: A: Fitting somatic signatures to alexandrovs's
8.5 years ago Julian Gehring ★ 1.3k
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1
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1.9k
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Comment: C: filterVcf by sample id
8.6 years ago Julian Gehring ★ 1.3k
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1.7k
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Comment: C: About "mutationsignature" package, how to use it with only one type of cancer?
8.6 years ago Julian Gehring ★ 1.3k
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Answer: A: About "mutationsignature" package, how to use it with only one type of cancer?
8.6 years ago Julian Gehring ★ 1.3k
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1.7k
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Answer: A: mutational signatures problems
8.6 years ago Julian Gehring ★ 1.3k
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Answer: A: specify the color in plotMutationSpectrum() of SomaticSignatures library
8.6 years ago Julian Gehring ★ 1.3k
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1.2k
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Answer: A: SomaticSignatures: properties of the estimated signatures
8.7 years ago Julian Gehring ★ 1.3k
5
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2
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7.8k
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Answer: A: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
updated 8.7 years ago by 25k • written 8.7 years ago by ★ 1.3k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
8.7 years ago Julian Gehring ★ 1.3k
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1
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7.8k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
8.7 years ago Julian Gehring ★ 1.3k
0
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1
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7.8k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
8.7 years ago Julian Gehring ★ 1.3k
0
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0
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7.8k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
8.7 years ago Julian Gehring ★ 1.3k
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1
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2.6k
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Comment: C: Regarding somatic signature package
8.7 years ago Julian Gehring ★ 1.3k
0
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1
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2.6k
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Comment: C: Regarding somatic signature package
8.7 years ago Julian Gehring ★ 1.3k
0
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1
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2.6k
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Comment: C: Regarding somatic signature package
8.7 years ago Julian Gehring ★ 1.3k
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1.6k
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Comment: C: summarizeOverlaps error with hg38
8.7 years ago Julian Gehring ★ 1.3k
1
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1
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1.6k
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Comment: C: summarizeOverlaps error with hg38
8.7 years ago Julian Gehring ★ 1.3k
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0
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841
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Comment: C: How to retrieve ranges within 1000bp of each range in an IRanges object?
8.7 years ago Julian Gehring ★ 1.3k
2
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1
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2.6k
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Answer: A: Regarding somatic signature package
8.7 years ago Julian Gehring ★ 1.3k
2
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2
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4.5k
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Answer: A: looping through a GRangesList object
8.7 years ago Julian Gehring ★ 1.3k
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1
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2.6k
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Comment: C: Regarding somatic signature package
8.7 years ago Julian Gehring ★ 1.3k
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1.5k
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Answer: A: Counting the no. of mutational clusters of each class, or kataegis
8.7 years ago Julian Gehring ★ 1.3k
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1.3k
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Answer: A: SomaticSignatures: extract low level information
8.8 years ago Julian Gehring ★ 1.3k
2
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1
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2.0k
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Answer: A: Somatic Signature Package (mutation Context)
8.8 years ago Julian Gehring ★ 1.3k
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1.3k
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Comment: C: Create a GmapGenome from a FaFile from AnnotationHub
8.9 years ago Julian Gehring ★ 1.3k
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1.2k
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Comment: C: Sampling protein coding genes of the same length distribution as another set of
8.9 years ago Julian Gehring ★ 1.3k
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1
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1.2k
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Answer: A: Sampling protein coding genes of the same length distribution as another set of
8.9 years ago Julian Gehring ★ 1.3k
3
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1
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1.4k
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Answer: A: SomaticSignatures : change order of x-axis in plotMutationSpectrum
8.9 years ago Julian Gehring ★ 1.3k
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1.4k
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Comment: C: SomaticSignatures : change order of x-axis in plotMutationSpectrum
8.9 years ago Julian Gehring ★ 1.3k
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0
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2.3k
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Answer: A: SomaticSignatures mutationContext (char ',') not in lookup table
9.1 years ago Julian Gehring ★ 1.3k
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0
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2.3k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.1 years ago Julian Gehring ★ 1.3k
0
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1
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2.3k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.1 years ago Julian Gehring ★ 1.3k
0
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1
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2.3k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.1 years ago Julian Gehring ★ 1.3k
1
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1
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2.3k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.1 years ago Julian Gehring ★ 1.3k
0
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2.0k
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Comment: C: SomaticSignatures low mutation rates
9.2 years ago Julian Gehring ★ 1.3k
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1
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2.0k
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Comment: C: SomaticSignatures low mutation rates
9.2 years ago Julian Gehring ★ 1.3k
1
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1
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2.0k
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Answer: A: SomaticSignatures low mutation rates
9.9 years ago • updated 9.2 years ago Julian Gehring ★ 1.3k
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1
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1.7k
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Comment: C: Number of Signatures
9.2 years ago Julian Gehring ★ 1.3k
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0
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1.4k
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Comment: C: Assess number of Signatures in Somatic signatures
9.2 years ago Julian Gehring ★ 1.3k
2
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1
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1.7k
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Answer: A: Number of Signatures
9.2 years ago Julian Gehring ★ 1.3k
0
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2
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1.4k
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Comment: C: Assess number of Signatures in Somatic signatures
9.2 years ago Julian Gehring ★ 1.3k
1
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1
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2.0k
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Comment: C: plot Signatures error
9.2 years ago Julian Gehring ★ 1.3k
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1
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2.0k
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Comment: C: plot Signatures error
9.2 years ago Julian Gehring ★ 1.3k
0
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1.3k
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Comment: C: nReplicates in Somatic Signatures
9.2 years ago Julian Gehring ★ 1.3k
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1
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1.3k
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Answer: A: nReplicates in Somatic Signatures
9.2 years ago Julian Gehring ★ 1.3k
0
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0
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2.2k
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Comment: C: problem using makeTxDbFromGFF and exonsBy() functions
9.2 years ago Julian Gehring ★ 1.3k
0
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1
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2.2k
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Answer: A: problem using makeTxDbFromGFF and exonsBy() functions
9.2 years ago Julian Gehring ★ 1.3k
0
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0
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2.2k
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Comment: C: problem using makeTxDbFromGFF and exonsBy() functions
9.2 years ago Julian Gehring ★ 1.3k
0
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1
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2.2k
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Comment: C: problem using makeTxDbFromGFF and exonsBy() functions
9.2 years ago Julian Gehring ★ 1.3k
1
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1
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2.0k
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Answer: A: plot Signatures error
9.2 years ago Julian Gehring ★ 1.3k
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