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Answer: A: Fitting somatic signatures to alexandrovs's
8.8 years ago Julian Gehring ★ 1.3k
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2.0k
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Comment: C: filterVcf by sample id
8.9 years ago Julian Gehring ★ 1.3k
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Comment: C: About "mutationsignature" package, how to use it with only one type of cancer?
8.9 years ago Julian Gehring ★ 1.3k
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Answer: A: About "mutationsignature" package, how to use it with only one type of cancer?
8.9 years ago Julian Gehring ★ 1.3k
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Answer: A: mutational signatures problems
8.9 years ago Julian Gehring ★ 1.3k
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Answer: A: specify the color in plotMutationSpectrum() of SomaticSignatures library
8.9 years ago Julian Gehring ★ 1.3k
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Answer: A: SomaticSignatures: properties of the estimated signatures
9.0 years ago Julian Gehring ★ 1.3k
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8.2k
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Answer: A: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
updated 9.0 years ago by 25k • written 9.0 years ago by ★ 1.3k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
9.0 years ago Julian Gehring ★ 1.3k
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8.2k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
9.0 years ago Julian Gehring ★ 1.3k
0
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1
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8.2k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
9.0 years ago Julian Gehring ★ 1.3k
0
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8.2k
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Comment: C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
9.0 years ago Julian Gehring ★ 1.3k
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1
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2.7k
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Comment: C: Regarding somatic signature package
9.0 years ago Julian Gehring ★ 1.3k
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1
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2.7k
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Comment: C: Regarding somatic signature package
9.0 years ago Julian Gehring ★ 1.3k
0
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1
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2.7k
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Comment: C: Regarding somatic signature package
9.0 years ago Julian Gehring ★ 1.3k
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1.7k
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Comment: C: summarizeOverlaps error with hg38
9.0 years ago Julian Gehring ★ 1.3k
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1
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1.7k
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Comment: C: summarizeOverlaps error with hg38
9.0 years ago Julian Gehring ★ 1.3k
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885
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Comment: C: How to retrieve ranges within 1000bp of each range in an IRanges object?
9.0 years ago Julian Gehring ★ 1.3k
2
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1
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2.7k
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Answer: A: Regarding somatic signature package
9.0 years ago Julian Gehring ★ 1.3k
2
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2
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4.7k
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Answer: A: looping through a GRangesList object
9.0 years ago Julian Gehring ★ 1.3k
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1
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2.7k
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Comment: C: Regarding somatic signature package
9.0 years ago Julian Gehring ★ 1.3k
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1.6k
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Answer: A: Counting the no. of mutational clusters of each class, or kataegis
9.1 years ago Julian Gehring ★ 1.3k
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1.3k
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Answer: A: SomaticSignatures: extract low level information
9.1 years ago Julian Gehring ★ 1.3k
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1
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2.1k
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Answer: A: Somatic Signature Package (mutation Context)
9.1 years ago Julian Gehring ★ 1.3k
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1.4k
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Comment: C: Create a GmapGenome from a FaFile from AnnotationHub
9.2 years ago Julian Gehring ★ 1.3k
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1.3k
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Comment: C: Sampling protein coding genes of the same length distribution as another set of
9.2 years ago Julian Gehring ★ 1.3k
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1
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1.3k
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Answer: A: Sampling protein coding genes of the same length distribution as another set of
9.2 years ago Julian Gehring ★ 1.3k
3
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1
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1.5k
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Answer: A: SomaticSignatures : change order of x-axis in plotMutationSpectrum
9.2 years ago Julian Gehring ★ 1.3k
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Comment: C: SomaticSignatures : change order of x-axis in plotMutationSpectrum
9.2 years ago Julian Gehring ★ 1.3k
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2.4k
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Answer: A: SomaticSignatures mutationContext (char ',') not in lookup table
9.4 years ago Julian Gehring ★ 1.3k
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2.4k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.4 years ago Julian Gehring ★ 1.3k
0
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1
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2.4k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.4 years ago Julian Gehring ★ 1.3k
0
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1
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2.4k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.4 years ago Julian Gehring ★ 1.3k
1
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1
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2.4k
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Comment: C: SomaticSignatures mutationContext (char ',') not in lookup table
9.4 years ago Julian Gehring ★ 1.3k
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2.1k
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Comment: C: SomaticSignatures low mutation rates
9.5 years ago Julian Gehring ★ 1.3k
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1
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2.1k
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Comment: C: SomaticSignatures low mutation rates
9.5 years ago Julian Gehring ★ 1.3k
1
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1
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2.1k
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Answer: A: SomaticSignatures low mutation rates
10.3 years ago • updated 9.5 years ago Julian Gehring ★ 1.3k
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1
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1.8k
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Comment: C: Number of Signatures
9.5 years ago Julian Gehring ★ 1.3k
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1.5k
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Comment: C: Assess number of Signatures in Somatic signatures
9.5 years ago Julian Gehring ★ 1.3k
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1
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1.8k
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Answer: A: Number of Signatures
9.5 years ago Julian Gehring ★ 1.3k
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2
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1.5k
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Comment: C: Assess number of Signatures in Somatic signatures
9.5 years ago Julian Gehring ★ 1.3k
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1
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2.2k
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Comment: C: plot Signatures error
9.5 years ago Julian Gehring ★ 1.3k
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1
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2.2k
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Comment: C: plot Signatures error
9.5 years ago Julian Gehring ★ 1.3k
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1.4k
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Comment: C: nReplicates in Somatic Signatures
9.5 years ago Julian Gehring ★ 1.3k
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1.4k
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Answer: A: nReplicates in Somatic Signatures
9.5 years ago Julian Gehring ★ 1.3k
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2.3k
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Comment: C: problem using makeTxDbFromGFF and exonsBy() functions
9.5 years ago Julian Gehring ★ 1.3k
0
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1
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2.3k
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Answer: A: problem using makeTxDbFromGFF and exonsBy() functions
9.5 years ago Julian Gehring ★ 1.3k
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0
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2.3k
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Comment: C: problem using makeTxDbFromGFF and exonsBy() functions
9.5 years ago Julian Gehring ★ 1.3k
0
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1
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2.3k
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Comment: C: problem using makeTxDbFromGFF and exonsBy() functions
9.5 years ago Julian Gehring ★ 1.3k
1
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1
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2.2k
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Answer: A: plot Signatures error
9.5 years ago Julian Gehring ★ 1.3k
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