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5
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7.4k
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Answer: A: What's the rationale for using the negative binomial distribution to model read
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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8.2k
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Comment: C: edger, trended or common dispersion
8.6 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.8k
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Comment: C: Characterization of simultaneous transcription factors over expression
8.6 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.8k
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Answer: A: Characterization of simultaneous transcription factors over expression
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.0k
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Comment: C: Adjusting for confounders along with paired testing using edgeR
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.0k
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Comment: C: Adjusting for confounders along with paired testing using edgeR
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.0k
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Comment: C: Adjusting for confounders along with paired testing using edgeR
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.8k
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Comment: C: DESEQ2 blocking design doesn't match expectation !
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.8k
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Comment: C: DESEQ2 blocking design doesn't match expectation !
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.0k
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Comment: C: Adjusting for confounders along with paired testing using edgeR
8.6 years ago Ryan C. Thompson ★ 7.9k
1
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1
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2.0k
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Answer: A: Adjusting for confounders along with paired testing using edgeR
8.6 years ago Ryan C. Thompson ★ 7.9k
11
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2
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3.3k
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Answer: A: Using multiple tools for differential gene expression analysis as validation
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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3.3k
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Comment: C: Using multiple tools for differential gene expression analysis as validation
8.6 years ago Ryan C. Thompson ★ 7.9k
2
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0
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12k
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Comment: C: EdgeR glmLRT vs glmQLFTest
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.6k
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Comment: C: Question about edgeR usage with one case and multiple controls
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.6k
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Comment: C: Question about edgeR usage with one case and multiple controls
8.6 years ago Ryan C. Thompson ★ 7.9k
2
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0
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999
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Answer: A: DESeq2 subexperiments vs. Whole experiment
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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2.0k
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Comment: C: Effect of treatment vs control over time in RNA Seq (edgeR and limma)
8.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.0k
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Answer: A: Effect of treatment vs control over time in RNA Seq (edgeR and limma)
8.6 years ago Ryan C. Thompson ★ 7.9k
2
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0
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1.9k
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Comment: C: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.9k
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Comment: C: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.9k
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Comment: C: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.7 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.9k
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Answer: A: Interpretation of DE analysis results of an Illumina microarray dataset, and pos
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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2.2k
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Comment: C: Skip estimateDispersions() DESeq2
8.7 years ago Ryan C. Thompson ★ 7.9k
1
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1
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2.2k
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Answer: A: Skip estimateDispersions() DESeq2
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.2k
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Comment: C: nested modeling for unequal groups with edgeR
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.2k
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Comment: C: nested modeling for unequal groups with edgeR
8.7 years ago Ryan C. Thompson ★ 7.9k
2
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1
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1.2k
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Answer: A: nested modeling for unequal groups with edgeR
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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2
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16k
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Comment: C: using duplicateCorrelation with limma+voom for RNA-seq data
10.7 years ago • updated 8.7 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.4k
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Answer: A: Error Estimating the NB Dispersion of a Dataset
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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4.1k
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Comment: C: PCA of svaseq "cleaned" counts and DESeq2 SV subtracted counts are different?
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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4.1k
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Answer: A: PCA of svaseq "cleaned" counts and DESeq2 SV subtracted counts are different?
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.7k
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Comment: C: Bounded Regression with Limma for RRBS?
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.3k
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Comment: C: Cannot load old SummarizedExperiment in R 3.3, Bioc 3.3
8.7 years ago Ryan C. Thompson ★ 7.9k
2
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2
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1.3k
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Cannot load old SummarizedExperiment in R 3.3, Bioc 3.3
summarizedexperiment backwards compatibility
updated 8.7 years ago by 16k • written 8.7 years ago by ★ 7.9k
1
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1
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1.2k
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Answer: A: edgeR for CNV detection
8.7 years ago Ryan C. Thompson ★ 7.9k
1
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0
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3.2k
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Comment: C: TopTable Problem : Unique Adj.P.Val which is near 1
8.7 years ago Ryan C. Thompson ★ 7.9k
2
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0
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3.2k
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Comment: C: TopTable Problem : Unique Adj.P.Val which is near 1
8.7 years ago Ryan C. Thompson ★ 7.9k
3
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0
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8.8k
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Answer: A: Choosing a threshold for minimum counts in RNAseq
8.7 years ago Ryan C. Thompson ★ 7.9k
1
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0
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7.3k
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Comment: C: How to use removeBatchEffect for removing effect of multiple confounding variabl
8.7 years ago Ryan C. Thompson ★ 7.9k
3
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0
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7.3k
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Comment: C: How to use removeBatchEffect for removing effect of multiple confounding variabl
8.7 years ago Ryan C. Thompson ★ 7.9k
11
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3
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7.3k
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Answer: A: How to use removeBatchEffect for removing effect of multiple confounding variabl
8.7 years ago Ryan C. Thompson ★ 7.9k
3
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0
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1.9k
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Answer: A: limma paired design with continous covariate
8.7 years ago Ryan C. Thompson ★ 7.9k
2
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1
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1.6k
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Comment: C: Run DESeq with only a handful of genes
8.7 years ago Ryan C. Thompson ★ 7.9k
3
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1
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1.3k
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Answer: A: DESeq2 how to define my conditions when I want the results comparing a subset of
8.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.6k
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Comment: C: Using edgeR with "traditional" coverage data?
8.8 years ago Ryan C. Thompson ★ 7.9k
0
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1
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11k
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Comment: C: Difference in Wald and LRT test for two condition RNAseq data.
8.8 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.8k
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Answer: A: DESeq normalization seems to reverse the directionality of log2FoldChange - is t
8.8 years ago Ryan C. Thompson ★ 7.9k
3
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2
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971
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Answer: A: edgeR: shall I fit the glm model separately for different cell lines?
8.8 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.7k
views
Comment: C: Differential expression across gene features
8.8 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 7 of 17
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