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Answer: A: Limma, model with several factors
11.7 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: PAM: Applying published classifiers
11.8 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: PAM: Applying published classifiers
11.8 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: (no subject)
11.8 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: (no subject)
11.8 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: DESeq Normalization Question
11.8 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Analyzing technical replicates with DESeq2
11.8 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: summarizeOverlaps mode ignoring inter feature overlaps
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Question on unbalanced paired design
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Testing for no change in RNA-seq data?
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Testing for no change in RNA-seq data?
11.9 years ago Ryan C. Thompson ★ 7.9k
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2.7k
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Comment: C: Testing for no change in RNA-seq data?
11.9 years ago Ryan C. Thompson ★ 7.9k
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2.7k
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Comment: C: Testing for no change in RNA-seq data?
11.9 years ago Ryan C. Thompson ★ 7.9k
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2.7k
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Testing for no change in RNA-seq data?
limma limma
updated 11.9 years ago by ★ 3.8k • written 11.9 years ago by ★ 7.9k
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Comment: C: Testing for no change in RNA-seq data?
11.9 years ago Ryan C. Thompson ★ 7.9k
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3
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2.1k
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edgeR Quasi-likelihood with tagwise dispersion?
edgeR edgeR
updated 11.9 years ago by 52k • written 11.9 years ago by ★ 7.9k
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Comment: C: edgeR Quasi-likelihood with tagwise dispersion?
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: edgeR for data combined from different studies and/or platforms
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR for data combined from different studies and/or platforms
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Difference between EdgeR and DeSeq in library normalization
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: yieldSize and paired end data in SummarizeOverlaps error?
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: yieldSize and paired end data in SummarizeOverlaps error?
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: time course analyses Illumina RNA-seq data
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: DESeq2
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: anova like test in edgeR
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR: paired samples DGE and GLM
11.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: QuasiSeq vs DSS
11.9 years ago Ryan C. Thompson ★ 7.9k
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1.9k
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Answer: A: QuasiSeq vs DSS
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: anova like test in edgeR
11.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR design matrix and contrast questions
12.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR design matrix and contrast questions
12.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: multi-mapped reads: Cufflinks + baySeq? edgeR?
12.0 years ago Ryan C. Thompson ★ 7.9k
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807
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Comment: C: annotationTools: character vector clean-up
12.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: annotationTools: character vector clean-up
12.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Normalization
12.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Normalization
12.0 years ago Ryan C. Thompson ★ 7.9k
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1.6k
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Comment: C: Normalization
12.0 years ago Ryan C. Thompson ★ 7.9k
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1.6k
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Answer: A: Normalization
12.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Normalization
12.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: What happened to GenomicFeatures::spliceGraph?
12.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: What happened to GenomicFeatures::spliceGraph?
12.0 years ago Ryan C. Thompson ★ 7.9k
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6
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What happened to GenomicFeatures::spliceGraph?
GenomicFeatures GenomicFeatures
updated 12.0 years ago by ★ 4.2k • written 12.0 years ago by ★ 7.9k
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753
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Answer: A: package LIMMA design matrix for my experiment
12.0 years ago Ryan C. Thompson ★ 7.9k
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957
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Finding genes with minimal expression across a set of conditions?
ASSIGN ASSIGN
12.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Using summarizeOverlaps with multiple samples/readgroups in a single bam file?
12.1 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR logFC
12.1 years ago Ryan C. Thompson ★ 7.9k
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3
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1.0k
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Using summarizeOverlaps with multiple samples/readgroups in a single bam file?
updated 12.1 years ago by 25k • written 12.1 years ago by ★ 7.9k
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Comment: C: limma, voom, weights: factorial versus nested interaction results
12.1 years ago Ryan C. Thompson ★ 7.9k
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614
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Answer: A: detailed analysis process of \"Comparisons Both Between
12.1 years ago Ryan C. Thompson ★ 7.9k
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983
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Answer: A: detailed analysis process of \"Comparisons Both Between and Within Subjects\" of
12.1 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 16 of 17
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