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Comment: C: Annotate package not working
11.1 years ago Ryan C. Thompson ★ 7.9k
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1.2k
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Comment: C: Annotate package not working
11.1 years ago Ryan C. Thompson ★ 7.9k
0
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7
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1.2k
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Annotate package not working
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 7.9k
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2
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Comment: C: GLM common and trended dispersion EdgeR.
11.1 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: GLM common and trended dispersion EdgeR.
11.1 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.2k
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Comment: C: Annotate package not working
11.1 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.5k
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Comment: C: Design/Contrast for Two-Channel Experimental Setup
11.1 years ago Ryan C. Thompson ★ 7.9k
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557
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FDR and Estimated Fragment length
11.1 years ago Ryan C. Thompson ★ 7.9k
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1
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3.5k
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Comment: C: Calculate BCV in edgeR - sample without replicates
11.2 years ago Ryan C. Thompson ★ 7.9k
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1.6k
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Comment: C: Fitting linear model with different design matrix for each gene in limma
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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1.2k
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Answer: A: calcNormFactors gives me NaN
11.2 years ago Ryan C. Thompson ★ 7.9k
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1
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1.6k
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Answer: A: Fitting linear model with different design matrix for each gene in limma
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.5k
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Answer: A: Calculate BCV in edgeR - sample without replicates
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.1k
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Comment: C: Easy way to convert CharacterList to character, collapsing each element?
11.2 years ago Ryan C. Thompson ★ 7.9k
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6
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1.1k
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Easy way to convert CharacterList to character, collapsing each element?
Annotation Annotation
updated 11.2 years ago by 16k • written 11.2 years ago by ★ 7.9k
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3.4k
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Answer: A: time series data edgeR?
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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3.3k
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Answer: A: Testing main effects and interactions in edgeR without contrasts
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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2.1k
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Answer: A: Voom and CQN input
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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579
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Answer: A: RNAseq visualization tools
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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537
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Answer: A: Finding similarities between multiple sequenced genomic libraries
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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2.8k
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Comment: C: Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?
11.3 years ago Ryan C. Thompson ★ 7.9k
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3.5k
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Answer: A: LIMMA on RT-PCR data
11.3 years ago Ryan C. Thompson ★ 7.9k
0
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5
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2.8k
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Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?
Rsubread Rsubread
updated 11.3 years ago by ★ 3.6k • written 11.3 years ago by ★ 7.9k
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2
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2.8k
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Comment: C: Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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4.4k
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Comment: C: DEseq for chip-seq data normalisation
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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1.3k
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Answer: A: help with limma design, contrast matrices
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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1.7k
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Comment: C: perspective on differential expression counting - unmapped reads?
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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1.7k
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Answer: A: perspective on differential expression counting - unmapped reads?
11.3 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.6k
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Comment: C: edgeR with two different groups (unpaired) at two time points (paired): Need som
11.3 years ago Ryan C. Thompson ★ 7.9k
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2
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3.0k
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Comment: C: ANCOVA microarray time-course continuous & categorical variables / Limma extensi
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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3.0k
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Comment: C: ANCOVA microarray time-course continuous & categorical variables / Limma extensi
11.3 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.1k
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tweeDEseq glm reduced model specification?
tweeDEseq tweeDEseq
updated 11.5 years ago by ▴ 20 • written 11.5 years ago by ★ 7.9k
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Answer: A: EdgeR: getting CPM values after batch effect correction
11.5 years ago Ryan C. Thompson ★ 7.9k
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0
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3.9k
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Answer: A: EdgeR: getting CPM values after batch effect correction
11.5 years ago Ryan C. Thompson ★ 7.9k
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0
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3.9k
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Answer: A: EdgeR: getting CPM values after batch effect correction
11.5 years ago Ryan C. Thompson ★ 7.9k
0
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0
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994
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Answer: A: TCC RNAseq normalization package error
11.5 years ago Ryan C. Thompson ★ 7.9k
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0
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3.6k
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Answer: A: mirDeep2 edgeR analysis
11.5 years ago Ryan C. Thompson ★ 7.9k
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0
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694
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Answer: A: edgeR v2.6 vs. v3.2.4
11.5 years ago Ryan C. Thompson ★ 7.9k
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1
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1.9k
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Answer: A: combining/merging several ExpressionSet objects from SCAN
11.5 years ago Ryan C. Thompson ★ 7.9k
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0
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4.0k
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Answer: A: Trimming of partial adaptor sequences
11.6 years ago Ryan C. Thompson ★ 7.9k
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0
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800
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Converting PDict to DNAStringSet?
convert convert
11.6 years ago Ryan C. Thompson ★ 7.9k
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0
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1.7k
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Correcting for batch effect between two batches of interleaved timepoints
Normalization GO limma edgeR Normalization GO limma edgeR
11.6 years ago Ryan C. Thompson ★ 7.9k
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0
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5.9k
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Answer: A: edgeR - ANOVA-like test for differential gene expression
11.6 years ago Ryan C. Thompson ★ 7.9k
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0
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2.5k
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Answer: A: Missing as.list generic from AnnotationDbi?
11.7 years ago Ryan C. Thompson ★ 7.9k
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0
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3.8k
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Answer: A: TMM normalization of DESeq input data
11.7 years ago Ryan C. Thompson ★ 7.9k
2
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2
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1.1k
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Implications of design argument to limma::voom?
updated 11.7 years ago by 52k • written 11.7 years ago by ★ 7.9k
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0
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1.1k
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Comment: C: Implications of design argument to limma::voom?
11.7 years ago Ryan C. Thompson ★ 7.9k
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1
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1.5k
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Answer: A: Differential expression testing for groups with unequal variances/dispersions?
11.7 years ago Ryan C. Thompson ★ 7.9k
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1
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1.6k
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Answer: A: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.7 years ago Ryan C. Thompson ★ 7.9k
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0
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1.2k
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Comment: C: Limma, model with several factors
11.7 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 15 of 17
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