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Comment: C: Annotate package not working
10.7 years ago Ryan C. Thompson ★ 7.9k
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1.1k
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Comment: C: Annotate package not working
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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7
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1.1k
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Annotate package not working
updated 10.7 years ago by 67k • written 10.7 years ago by ★ 7.9k
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2
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Comment: C: GLM common and trended dispersion EdgeR.
10.7 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: GLM common and trended dispersion EdgeR.
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.1k
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Comment: C: Annotate package not working
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.4k
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Comment: C: Design/Contrast for Two-Channel Experimental Setup
10.8 years ago Ryan C. Thompson ★ 7.9k
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511
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FDR and Estimated Fragment length
10.8 years ago Ryan C. Thompson ★ 7.9k
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1
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3.3k
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Comment: C: Calculate BCV in edgeR - sample without replicates
10.8 years ago Ryan C. Thompson ★ 7.9k
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1.5k
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Comment: C: Fitting linear model with different design matrix for each gene in limma
10.8 years ago Ryan C. Thompson ★ 7.9k
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0
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1.1k
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Answer: A: calcNormFactors gives me NaN
10.8 years ago Ryan C. Thompson ★ 7.9k
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1
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1.5k
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Answer: A: Fitting linear model with different design matrix for each gene in limma
10.8 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.3k
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Answer: A: Calculate BCV in edgeR - sample without replicates
10.8 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.0k
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Comment: C: Easy way to convert CharacterList to character, collapsing each element?
10.8 years ago Ryan C. Thompson ★ 7.9k
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6
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1.0k
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Easy way to convert CharacterList to character, collapsing each element?
Annotation Annotation
updated 10.8 years ago by 16k • written 10.8 years ago by ★ 7.9k
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3.4k
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Answer: A: time series data edgeR?
10.8 years ago Ryan C. Thompson ★ 7.9k
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0
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3.2k
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Answer: A: Testing main effects and interactions in edgeR without contrasts
10.8 years ago Ryan C. Thompson ★ 7.9k
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0
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2.0k
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Answer: A: Voom and CQN input
10.9 years ago Ryan C. Thompson ★ 7.9k
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0
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553
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Answer: A: RNAseq visualization tools
10.9 years ago Ryan C. Thompson ★ 7.9k
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507
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Answer: A: Finding similarities between multiple sequenced genomic libraries
10.9 years ago Ryan C. Thompson ★ 7.9k
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2.7k
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Comment: C: Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?
10.9 years ago Ryan C. Thompson ★ 7.9k
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3.3k
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Answer: A: LIMMA on RT-PCR data
10.9 years ago Ryan C. Thompson ★ 7.9k
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5
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2.7k
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Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?
Rsubread Rsubread
updated 10.9 years ago by ★ 3.6k • written 10.9 years ago by ★ 7.9k
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2
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Comment: C: Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?
10.9 years ago Ryan C. Thompson ★ 7.9k
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0
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4.2k
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Comment: C: DEseq for chip-seq data normalisation
10.9 years ago Ryan C. Thompson ★ 7.9k
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1.3k
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Answer: A: help with limma design, contrast matrices
10.9 years ago Ryan C. Thompson ★ 7.9k
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0
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1.6k
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Comment: C: perspective on differential expression counting - unmapped reads?
10.9 years ago Ryan C. Thompson ★ 7.9k
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1.6k
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Answer: A: perspective on differential expression counting - unmapped reads?
10.9 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.6k
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Comment: C: edgeR with two different groups (unpaired) at two time points (paired): Need som
11.0 years ago Ryan C. Thompson ★ 7.9k
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2
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2.9k
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Comment: C: ANCOVA microarray time-course continuous & categorical variables / Limma extensi
11.0 years ago Ryan C. Thompson ★ 7.9k
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2.9k
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Comment: C: ANCOVA microarray time-course continuous & categorical variables / Limma extensi
11.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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990
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tweeDEseq glm reduced model specification?
tweeDEseq tweeDEseq
updated 11.1 years ago by ▴ 20 • written 11.1 years ago by ★ 7.9k
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0
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3.8k
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Answer: A: EdgeR: getting CPM values after batch effect correction
11.1 years ago Ryan C. Thompson ★ 7.9k
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3.8k
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Answer: A: EdgeR: getting CPM values after batch effect correction
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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3.8k
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Answer: A: EdgeR: getting CPM values after batch effect correction
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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935
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Answer: A: TCC RNAseq normalization package error
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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3.5k
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Answer: A: mirDeep2 edgeR analysis
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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652
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Answer: A: edgeR v2.6 vs. v3.2.4
11.2 years ago Ryan C. Thompson ★ 7.9k
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1
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1.7k
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Answer: A: combining/merging several ExpressionSet objects from SCAN
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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3.8k
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Answer: A: Trimming of partial adaptor sequences
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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764
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Converting PDict to DNAStringSet?
convert convert
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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1.6k
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Correcting for batch effect between two batches of interleaved timepoints
Normalization GO limma edgeR Normalization GO limma edgeR
11.2 years ago Ryan C. Thompson ★ 7.9k
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5.7k
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Answer: A: edgeR - ANOVA-like test for differential gene expression
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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2.4k
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Answer: A: Missing as.list generic from AnnotationDbi?
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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3.7k
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Answer: A: TMM normalization of DESeq input data
11.3 years ago Ryan C. Thompson ★ 7.9k
2
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2
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1.1k
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Implications of design argument to limma::voom?
updated 11.3 years ago by 51k • written 11.3 years ago by ★ 7.9k
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0
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1.1k
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Comment: C: Implications of design argument to limma::voom?
11.3 years ago Ryan C. Thompson ★ 7.9k
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1
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1.5k
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Answer: A: Differential expression testing for groups with unequal variances/dispersions?
11.4 years ago Ryan C. Thompson ★ 7.9k
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1
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1.5k
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Answer: A: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Ryan C. Thompson ★ 7.9k
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0
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1.1k
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Comment: C: Limma, model with several factors
11.4 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 15 of 17
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