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Comment: C: total count filter cutoff
10.4 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: total count filter cutoff
10.4 years ago Ryan C. Thompson ★ 7.9k
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870
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Answer: A: limma small vs large number of samples
10.4 years ago Ryan C. Thompson ★ 7.9k
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5.0k
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Comment: C: EdgeR: replicated pools, yes or not?
10.5 years ago Ryan C. Thompson ★ 7.9k
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5.0k
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Comment: C: EdgeR: replicated pools, yes or not?
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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1
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5.0k
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Answer: A: EdgeR: replicated pools, yes or not?
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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0
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5.0k
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Answer: A: EdgeR: replicated pools, yes or not?
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.8k
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Comment: C: EdgeR: dispersion estimation
10.5 years ago Ryan C. Thompson ★ 7.9k
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2
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5.0k
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Comment: C: EdgeR: replicated pools, yes or not?
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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2
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5.0k
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Answer: A: EdgeR: replicated pools, yes or not?
10.5 years ago Ryan C. Thompson ★ 7.9k
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1.2k
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Comment: C: lumi - limma contrast design
10.5 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: summarizeOverlaps using GRanges or bed file as reads?
10.5 years ago Ryan C. Thompson ★ 7.9k
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2.8k
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Comment: C: summarizeOverlaps using GRanges or bed file as reads?
10.5 years ago Ryan C. Thompson ★ 7.9k
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3.0k
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Answer: A: use of voom function with attract package
10.5 years ago Ryan C. Thompson ★ 7.9k
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5
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2.8k
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summarizeOverlaps using GRanges or bed file as reads?
convert convert
updated 10.5 years ago by 25k • written 10.5 years ago by ★ 7.9k
0
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1
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1.1k
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Answer: A: Making three-way and four-way comparisons
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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0
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963
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Answer: A: Getting edgeR normalized counts within the GLM approach
10.5 years ago Ryan C. Thompson ★ 7.9k
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1.4k
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Comment: C: Feature request for Rsubread::featureCounts: read length adjustment
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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807
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Answer: A: DEXSeq dispersion trend estimation?
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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852
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DEXSeq dispersion trend estimation?
DEXSeq DEXSeq
10.5 years ago Ryan C. Thompson ★ 7.9k
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3.6k
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Comment: C: Running the GSEA algorithm
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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1.8k
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Answer: A: Computing normalized counts for exons in edgeR
10.5 years ago Ryan C. Thompson ★ 7.9k
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2.0k
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Comment: C: edgeR GLM to adjust for batch effect
10.5 years ago Ryan C. Thompson ★ 7.9k
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2.0k
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Answer: A: edgeR GLM to adjust for batch effect
10.5 years ago Ryan C. Thompson ★ 7.9k
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728
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Answer: A: problem with EdgeR script
10.5 years ago Ryan C. Thompson ★ 7.9k
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1.1k
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Answer: A: Technical Replicates in EdgeR
10.6 years ago Ryan C. Thompson ★ 7.9k
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0
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2.3k
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Comment: C: tagwise parameters for negative binomial distribution in edgeR
10.6 years ago Ryan C. Thompson ★ 7.9k
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0
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1.8k
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Comment: C: LIMMA/VOOM: Using and Interpretating of natural splines coefficients for time se
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.5k
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Answer: A: creating contrast matrix (limma) for two factorial in R
10.6 years ago Ryan C. Thompson ★ 7.9k
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2.7k
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Comment: C: EdgeR classic vs. glm
10.6 years ago Ryan C. Thompson ★ 7.9k
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1
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1.8k
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Answer: A: LIMMA/VOOM: Using and Interpretating of natural splines coefficients for time se
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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4.1k
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Answer: A: edgeR design matrix, one group vs average of other groups
10.6 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.1k
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Answer: A: Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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2.6k
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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2.6k
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.6k
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Answer: A: how to determine what kind of dispersion to use
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.3k
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Answer: A: Defining the model matrix for a multi-factorial design with interactions - edgeR
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.6k
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Comment: C: EdgeR: artifacts on BCV plot
10.7 years ago Ryan C. Thompson ★ 7.9k
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1.1k
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Comment: C: (EdgeR) statistical justification of partitioning dataset for multiple analysis
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.0k
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Answer: A: EdgeR: artifacts on BCV plot
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.1k
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Answer: A: (EdgeR) statistical justification of partitioning dataset for multiple analysis
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.3k
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Answer: A: Defining the model matrix for a multi-factorial design with interactions - edgeR
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.2k
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Answer: A: EdgeR multi-factors testing questions
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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2.8k
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Comment: C: Odd contrast; does it make statistical sense?
10.7 years ago Ryan C. Thompson ★ 7.9k
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20
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2.8k
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Odd contrast; does it make statistical sense?
edgeR edgeR
updated 2.6 years ago by 51k • written 10.7 years ago by ★ 7.9k
0
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0
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2.8k
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Comment: C: Odd contrast; does it make statistical sense?
10.7 years ago Ryan C. Thompson ★ 7.9k
1
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0
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6.1k
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Answer: A: Voom and removing batch effect
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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0
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873
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Answer: A: edgeR FC calculation question
10.7 years ago Ryan C. Thompson ★ 7.9k
1
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1
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5.3k
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Answer: A: EdgeR for proteomics data
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.3k
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Answer: A: DESeq nbinomGLMTest specific comparisons
10.7 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 14 of 17
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