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Comment: C: total count filter cutoff
11.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: total count filter cutoff
11.0 years ago Ryan C. Thompson ★ 7.9k
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940
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Answer: A: limma small vs large number of samples
11.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: EdgeR: replicated pools, yes or not?
11.0 years ago Ryan C. Thompson ★ 7.9k
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5.4k
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Comment: C: EdgeR: replicated pools, yes or not?
11.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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5.4k
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Answer: A: EdgeR: replicated pools, yes or not?
11.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
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5.4k
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Answer: A: EdgeR: replicated pools, yes or not?
11.0 years ago Ryan C. Thompson ★ 7.9k
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3.1k
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Comment: C: EdgeR: dispersion estimation
11.0 years ago Ryan C. Thompson ★ 7.9k
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5.4k
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Comment: C: EdgeR: replicated pools, yes or not?
11.0 years ago Ryan C. Thompson ★ 7.9k
0
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2
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5.4k
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Answer: A: EdgeR: replicated pools, yes or not?
11.0 years ago Ryan C. Thompson ★ 7.9k
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1.3k
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Comment: C: lumi - limma contrast design
11.0 years ago Ryan C. Thompson ★ 7.9k
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2.9k
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Comment: C: summarizeOverlaps using GRanges or bed file as reads?
11.0 years ago Ryan C. Thompson ★ 7.9k
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2.9k
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Comment: C: summarizeOverlaps using GRanges or bed file as reads?
11.0 years ago Ryan C. Thompson ★ 7.9k
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3.2k
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Answer: A: use of voom function with attract package
11.0 years ago Ryan C. Thompson ★ 7.9k
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5
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2.9k
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summarizeOverlaps using GRanges or bed file as reads?
convert convert
updated 11.0 years ago by 25k • written 11.0 years ago by ★ 7.9k
0
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1
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1.2k
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Answer: A: Making three-way and four-way comparisons
11.0 years ago Ryan C. Thompson ★ 7.9k
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0
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1.1k
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Answer: A: Getting edgeR normalized counts within the GLM approach
11.1 years ago Ryan C. Thompson ★ 7.9k
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1.5k
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Comment: C: Feature request for Rsubread::featureCounts: read length adjustment
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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887
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Answer: A: DEXSeq dispersion trend estimation?
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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907
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DEXSeq dispersion trend estimation?
DEXSeq DEXSeq
11.1 years ago Ryan C. Thompson ★ 7.9k
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3.8k
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Comment: C: Running the GSEA algorithm
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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1.9k
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Answer: A: Computing normalized counts for exons in edgeR
11.1 years ago Ryan C. Thompson ★ 7.9k
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2.1k
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Comment: C: edgeR GLM to adjust for batch effect
11.1 years ago Ryan C. Thompson ★ 7.9k
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2.1k
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Answer: A: edgeR GLM to adjust for batch effect
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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791
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Answer: A: problem with EdgeR script
11.1 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Technical Replicates in EdgeR
11.1 years ago Ryan C. Thompson ★ 7.9k
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2.5k
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Comment: C: tagwise parameters for negative binomial distribution in edgeR
11.1 years ago Ryan C. Thompson ★ 7.9k
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2.0k
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Comment: C: LIMMA/VOOM: Using and Interpretating of natural splines coefficients for time se
11.1 years ago Ryan C. Thompson ★ 7.9k
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1
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2.6k
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Answer: A: creating contrast matrix (limma) for two factorial in R
11.1 years ago Ryan C. Thompson ★ 7.9k
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2.9k
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Comment: C: EdgeR classic vs. glm
11.1 years ago Ryan C. Thompson ★ 7.9k
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1
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2.0k
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Answer: A: LIMMA/VOOM: Using and Interpretating of natural splines coefficients for time se
11.1 years ago Ryan C. Thompson ★ 7.9k
0
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0
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4.3k
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Answer: A: edgeR design matrix, one group vs average of other groups
11.1 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.2k
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Answer: A: Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
11.1 years ago Ryan C. Thompson ★ 7.9k
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0
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2.8k
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
11.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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1.7k
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Answer: A: how to determine what kind of dispersion to use
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.4k
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Answer: A: Defining the model matrix for a multi-factorial design with interactions - edgeR
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.8k
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Comment: C: EdgeR: artifacts on BCV plot
11.2 years ago Ryan C. Thompson ★ 7.9k
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1.1k
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Comment: C: (EdgeR) statistical justification of partitioning dataset for multiple analysis
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.2k
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Answer: A: EdgeR: artifacts on BCV plot
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.1k
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Answer: A: (EdgeR) statistical justification of partitioning dataset for multiple analysis
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.5k
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Answer: A: Defining the model matrix for a multi-factorial design with interactions - edgeR
11.2 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.3k
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Answer: A: EdgeR multi-factors testing questions
11.2 years ago Ryan C. Thompson ★ 7.9k
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0
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3.4k
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Comment: C: Odd contrast; does it make statistical sense?
11.3 years ago Ryan C. Thompson ★ 7.9k
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20
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3.4k
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Odd contrast; does it make statistical sense?
edgeR edgeR
updated 3.1 years ago by 52k • written 11.3 years ago by ★ 7.9k
0
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0
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3.4k
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Comment: C: Odd contrast; does it make statistical sense?
11.3 years ago Ryan C. Thompson ★ 7.9k
1
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0
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6.5k
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Answer: A: Voom and removing batch effect
11.3 years ago Ryan C. Thompson ★ 7.9k
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0
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922
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Answer: A: edgeR FC calculation question
11.3 years ago Ryan C. Thompson ★ 7.9k
1
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1
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5.8k
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Answer: A: EdgeR for proteomics data
11.3 years ago Ryan C. Thompson ★ 7.9k
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1
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1.4k
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Answer: A: DESeq nbinomGLMTest specific comparisons
11.3 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 14 of 17
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