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Comment: C: Forging a BSgenome with lots of seqnames fails
10.1 years ago Ryan C. Thompson ★ 7.9k
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Forging a BSgenome with lots of seqnames fails
bsgenome
10.1 years ago Ryan C. Thompson ★ 7.9k
0
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0
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Comment: C: Forging a BSgenome with lots of seqnames fails
10.1 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.5k
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Comment: C: Forging a BSgenome with lots of seqnames fails
10.1 years ago Ryan C. Thompson ★ 7.9k
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2
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3.1k
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Comment: C: DESEQ ANODEV : A time course study
updated 10.2 years ago by 52k • written 11.7 years ago by ★ 7.9k
2
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1
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5.7k
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Answer: A: edgeR and Normalization of RNAseq data using ERCC controls
10.2 years ago Ryan C. Thompson ★ 7.9k
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0
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16k
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Answer: A: how to calculate gene length to be used in rpkm() in edgeR
updated 10.3 years ago by 52k • written 10.8 years ago by ★ 7.9k
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1
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1.2k
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Can subjunc use splice sites from a reference annotation (i.e. GTF file)?
Annotation Rsubread
updated 10.3 years ago by 52k • written 11.1 years ago by ★ 7.9k
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0
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3.0k
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Comment: C: Help, Statistical test for unbalanced data set
10.3 years ago Ryan C. Thompson ★ 7.9k
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6
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2.5k
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Missing as.list generic from AnnotationDbi?
annotate AnnotationDbi annotate AnnotationDbi
updated 10.4 years ago by ★ 2.0k • written 11.7 years ago by ★ 7.9k
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0
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2.3k
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Answer: A: Tissue heterogeneity and TMM normalization
10.4 years ago Ryan C. Thompson ★ 7.9k
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0
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1.6k
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Answer: A: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
10.4 years ago Ryan C. Thompson ★ 7.9k
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1
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1.8k
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Answer: A: parallel BAM sorting with Rsamtools
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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1.2k
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Answer: A: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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1
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1.9k
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Answer: A: edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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1
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898
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Answer: A: Combing Effects (t-stats) from experiment with common reference design?
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.5k
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Comment: C: Interspecies differential expression of orthologs with Edger
10.5 years ago Ryan C. Thompson ★ 7.9k
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1
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2.1k
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Comment: C: Single sample normalization of single-channel Agilent microarrays
10.5 years ago Ryan C. Thompson ★ 7.9k
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1
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1.6k
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Answer: A: normalization and batch correction across multiple project
10.5 years ago Ryan C. Thompson ★ 7.9k
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2
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2.1k
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Answer: A: Single sample normalization of single-channel Agilent microarrays
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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1.8k
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Comment: C: Any problem with the design matrix or the contrasts? Thanks
10.5 years ago Ryan C. Thompson ★ 7.9k
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1
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1.8k
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Answer: A: Any problem with the design matrix or the contrasts? Thanks
10.5 years ago Ryan C. Thompson ★ 7.9k
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1
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3.0k
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Answer: A: "Normalising" GRanges coverage object
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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927
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Contrast among a subset of interactions, glm in edgeR
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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712
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Contrast matrix in limma
limma limma
10.5 years ago Ryan C. Thompson ★ 7.9k
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2.2k
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Answer: A: ANOVA analysis using edgeR
10.5 years ago Ryan C. Thompson ★ 7.9k
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0
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2.5k
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Answer: A: Combat: Removing multiple batch effects
10.5 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.1k
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Answer: A: Expected number of DE genes?
10.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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757
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Dates in DataFrames printed incorrectly?
updated 10.6 years ago by ★ 11k • written 10.6 years ago by ★ 7.9k
0
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1
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655
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Comment: C: Elementwise appending of List elements?
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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3
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655
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Elementwise appending of List elements?
updated 10.7 years ago by 16k • written 10.7 years ago by ★ 7.9k
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3
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1.3k
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Answer: A: Contrast among a subset of interactions, glm in edgeR
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.2k
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Answer: A: edgeR and DESeq2: model design and estimation of dispersion
10.7 years ago Ryan C. Thompson ★ 7.9k
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0
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1.6k
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Comment: C: Limma package and minimal number of genes
10.7 years ago Ryan C. Thompson ★ 7.9k
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0
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1.6k
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Answer: A: Limma package and minimal number of genes
10.7 years ago Ryan C. Thompson ★ 7.9k
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0
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2.5k
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Answer: A: GRanges - coercion from dataframe
10.7 years ago Ryan C. Thompson ★ 7.9k
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1
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1.8k
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Comment: C: edgeR calcNormFactors for paired counts
10.7 years ago Ryan C. Thompson ★ 7.9k
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1
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1.8k
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Answer: A: edgeR calcNormFactors for paired counts
10.7 years ago Ryan C. Thompson ★ 7.9k
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1
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2.5k
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Answer: A: genefilter vs limma - many probes filtered
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.3k
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Answer: A: DESeq/DESeq normalization on different experiments
10.7 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.7k
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Comment: C: Problem running summarizeOverlaps()
10.7 years ago Ryan C. Thompson ★ 7.9k
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0
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1.3k
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graphite biopax conversion code?
Pathways graphite Pathways graphite
10.8 years ago Ryan C. Thompson ★ 7.9k
0
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1
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4.4k
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Answer: A: Limma design code with technical replicates, paired samples and two factors
10.8 years ago Ryan C. Thompson ★ 7.9k
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1
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2.7k
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Comment: C: featureCounts segfault
10.8 years ago Ryan C. Thompson ★ 7.9k
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3
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2.7k
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featureCounts segfault
Annotation BSgenome BSgenome Rsubread Annotation BSgenome BSgenome Rsubread
updated 10.8 years ago by ★ 3.6k • written 10.8 years ago by ★ 7.9k
0
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0
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2.0k
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Comment: C: Paired comparisons in EdgeR
10.8 years ago Ryan C. Thompson ★ 7.9k
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2
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2.1k
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Comment: C: Feature request for Rsubread::featureCounts: read length adjustment
10.8 years ago Ryan C. Thompson ★ 7.9k
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1
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2.1k
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Comment: C: Feature request for Rsubread::featureCounts: read length adjustment
10.8 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.1k
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Answer: A: Feature request for Rsubread::featureCounts: read length adjustment
10.8 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.8k
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Comment: C: total count filter cutoff
10.8 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 13 of 17
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