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2
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1.9k
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Answer: A: Correlation of a Linear Variable
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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0
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23k
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Comment: C: Report and compare log2FC vs FC
9.9 years ago Ryan C. Thompson ★ 7.9k
2
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1
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23k
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Answer: A: Report and compare log2FC vs FC
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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0
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4.7k
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Comment: C: EdgeR with normalized data
9.9 years ago Ryan C. Thompson ★ 7.9k
0
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0
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3.7k
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Comment: C: voom/limma contrast for comparing one level against base-line
9.9 years ago Ryan C. Thompson ★ 7.9k
0
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0
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3.7k
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Comment: C: voom/limma contrast for comparing one level against base-line
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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1
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3.7k
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Answer: A: voom/limma contrast for comparing one level against base-line
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.6k
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Answer: A: Are the rlog or VST values from DESeq2 comparable across genes?
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.4k
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Answer: A: PCA of voom weight values
9.9 years ago Ryan C. Thompson ★ 7.9k
0
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0
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7.3k
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Comment: C: Rsubread::featureCounts extremely slow on some annotations
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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0
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1.7k
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Answer: A: Need advice on normalization of SMART-amplified RNA-Seq data
9.9 years ago Ryan C. Thompson ★ 7.9k
2
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2
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4.9k
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Comment: C: How to model a comparison between comparisons in edgeR?
9.9 years ago Ryan C. Thompson ★ 7.9k
2
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1
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4.9k
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Comment: C: How to model a comparison between comparisons in edgeR?
9.9 years ago Ryan C. Thompson ★ 7.9k
0
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0
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6.5k
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Comment: C: T-test for microarray data
9.9 years ago Ryan C. Thompson ★ 7.9k
3
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0
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4.2k
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Answer: A: DESeq2: which normalized data matrix should I take?
9.9 years ago Ryan C. Thompson ★ 7.9k
2
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1
reply
4.9k
views
Answer: A: How to model a comparison between comparisons in edgeR?
9.9 years ago Ryan C. Thompson ★ 7.9k
0
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2
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7.6k
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Comment: C: GLM Likelihood ratio test
9.9 years ago Ryan C. Thompson ★ 7.9k
0
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0
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7.6k
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Comment: C: GLM Likelihood ratio test
9.9 years ago Ryan C. Thompson ★ 7.9k
1
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0
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2.0k
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Comment: C: Cannot find function treatDGE() in package edgeR?
10.0 years ago Ryan C. Thompson ★ 7.9k
1
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1
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2.0k
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Answer: A: Cannot find function treatDGE() in package edgeR?
10.0 years ago Ryan C. Thompson ★ 7.9k
2
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0
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6.5k
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Comment: C: T-test for microarray data
10.0 years ago Ryan C. Thompson ★ 7.9k
3
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1
reply
1.8k
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Comment: C: How to remove dublicate probesets matching to the same gene, after toptable in o
10.0 years ago Ryan C. Thompson ★ 7.9k
2
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0
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1.8k
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Answer: A: How to remove dublicate probesets matching to the same gene, after toptable in o
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
reply
26k
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Comment: C: P Value of 0?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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26k
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Comment: C: P Value of 0?
10.0 years ago Ryan C. Thompson ★ 7.9k
1
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0
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5.7k
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Comment: C: Proper way to build phenoData object?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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26k
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Comment: C: P Value of 0?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
reply
931
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Comment: C: Can I use the dispersion estimated using other methods in replacement of that co
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
reply
931
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Comment: C: Can I use the dispersion estimated using other methods in replacement of that co
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.6k
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Comment: C: tileGenome for overlapping ranges?
10.0 years ago Ryan C. Thompson ★ 7.9k
2
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0
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26k
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Answer: A: P Value of 0?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
reply
3.5k
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Comment: C: RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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3
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6.7k
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Comment: C: Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.5k
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Comment: C: Multi-factor Comparison in DESeq 2 Issue
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.6k
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Comment: C: Strategies for fRMA on custom dataset(s)?
10.0 years ago Ryan C. Thompson ★ 7.9k
2
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2
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1.6k
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Strategies for fRMA on custom dataset(s)?
frma frmatools
updated 10.0 years ago by ▴ 830 • written 10.0 years ago by ★ 7.9k
0
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1
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3.5k
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Comment: C: RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
reply
3.0k
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Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
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3.5k
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Comment: C: RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
10.0 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
2.5k
views
Answer: A: Multi-factor Comparison in DESeq 2 Issue
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
replies
3.0k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
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3.0k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.0 years ago Ryan C. Thompson ★ 7.9k
2
votes
8
replies
3.0k
views
frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
frma frmatools
updated 10.0 years ago by ▴ 830 • written 10.0 years ago by ★ 7.9k
0
votes
1
reply
3.0k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.0 years ago Ryan C. Thompson ★ 7.9k
3
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0
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1.3k
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Answer: A: Are joint tests of model coefficients in the limma package possible?
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
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2.6k
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Comment: C: summarizing shRNA data per gene with edgeR
10.0 years ago Ryan C. Thompson ★ 7.9k
2
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2
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2.6k
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Answer: A: summarizing shRNA data per gene with edgeR
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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2
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2.6k
views
Comment: C: summarizing shRNA data per gene with edgeR
10.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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8.2k
views
Comment: C: Remove batch effect in small RNASeq study (SVA or others?)
updated 10.1 years ago by 52k • written 10.8 years ago by ★ 7.9k
0
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1
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8.2k
views
Comment: C: Remove batch effect in small RNASeq study (SVA or others?)
updated 10.1 years ago by 52k • written 10.8 years ago by ★ 7.9k
819 results • Page 12 of 17
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