Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
1.9k
views
Answer: A: Correlation of a Linear Variable
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
24k
views
Comment: C: Report and compare log2FC vs FC
10.1 years ago Ryan C. Thompson ★ 7.9k
2
votes
1
reply
24k
views
Answer: A: Report and compare log2FC vs FC
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
4.9k
views
Comment: C: EdgeR with normalized data
10.1 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
3.8k
views
Comment: C: voom/limma contrast for comparing one level against base-line
10.1 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
3.8k
views
Comment: C: voom/limma contrast for comparing one level against base-line
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
1
reply
3.8k
views
Answer: A: voom/limma contrast for comparing one level against base-line
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
2.6k
views
Answer: A: Are the rlog or VST values from DESeq2 comparable across genes?
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
2.5k
views
Answer: A: PCA of voom weight values
10.1 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
7.7k
views
Comment: C: Rsubread::featureCounts extremely slow on some annotations
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
1.8k
views
Answer: A: Need advice on normalization of SMART-amplified RNA-Seq data
10.1 years ago Ryan C. Thompson ★ 7.9k
2
votes
2
replies
5.2k
views
Comment: C: How to model a comparison between comparisons in edgeR?
10.1 years ago Ryan C. Thompson ★ 7.9k
2
votes
1
reply
5.2k
views
Comment: C: How to model a comparison between comparisons in edgeR?
10.1 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
6.6k
views
Comment: C: T-test for microarray data
10.1 years ago Ryan C. Thompson ★ 7.9k
3
votes
0
replies
4.3k
views
Answer: A: DESeq2: which normalized data matrix should I take?
10.1 years ago Ryan C. Thompson ★ 7.9k
2
votes
1
reply
5.2k
views
Answer: A: How to model a comparison between comparisons in edgeR?
10.1 years ago Ryan C. Thompson ★ 7.9k
0
votes
2
replies
7.8k
views
Comment: C: GLM Likelihood ratio test
10.1 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
7.8k
views
Comment: C: GLM Likelihood ratio test
10.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
2.0k
views
Comment: C: Cannot find function treatDGE() in package edgeR?
10.2 years ago Ryan C. Thompson ★ 7.9k
1
vote
1
reply
2.0k
views
Answer: A: Cannot find function treatDGE() in package edgeR?
10.2 years ago Ryan C. Thompson ★ 7.9k
2
votes
0
replies
6.6k
views
Comment: C: T-test for microarray data
10.2 years ago Ryan C. Thompson ★ 7.9k
3
votes
1
reply
1.8k
views
Comment: C: How to remove dublicate probesets matching to the same gene, after toptable in o
10.2 years ago Ryan C. Thompson ★ 7.9k
2
votes
0
replies
1.8k
views
Answer: A: How to remove dublicate probesets matching to the same gene, after toptable in o
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
26k
views
Comment: C: P Value of 0?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
26k
views
Comment: C: P Value of 0?
10.2 years ago Ryan C. Thompson ★ 7.9k
1
vote
0
replies
5.9k
views
Comment: C: Proper way to build phenoData object?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
26k
views
Comment: C: P Value of 0?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
970
views
Comment: C: Can I use the dispersion estimated using other methods in replacement of that co
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
970
views
Comment: C: Can I use the dispersion estimated using other methods in replacement of that co
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
3.8k
views
Comment: C: tileGenome for overlapping ranges?
10.2 years ago Ryan C. Thompson ★ 7.9k
2
votes
0
replies
26k
views
Answer: A: P Value of 0?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
3.6k
views
Comment: C: RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
3
replies
6.9k
views
Comment: C: Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
2.5k
views
Comment: C: Multi-factor Comparison in DESeq 2 Issue
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
1.7k
views
Comment: C: Strategies for fRMA on custom dataset(s)?
10.2 years ago Ryan C. Thompson ★ 7.9k
2
votes
2
replies
1.7k
views
Strategies for fRMA on custom dataset(s)?
frma frmatools
updated 10.2 years ago by ▴ 830 • written 10.2 years ago by ★ 7.9k
0
votes
1
reply
3.6k
views
Comment: C: RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
3.2k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
3.6k
views
Comment: C: RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
2.5k
views
Answer: A: Multi-factor Comparison in DESeq 2 Issue
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
3.2k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
3.2k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.2 years ago Ryan C. Thompson ★ 7.9k
2
votes
8
replies
3.2k
views
frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
frma frmatools
updated 10.2 years ago by ▴ 830 • written 10.2 years ago by ★ 7.9k
0
votes
1
reply
3.2k
views
Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
10.2 years ago Ryan C. Thompson ★ 7.9k
3
votes
0
replies
1.4k
views
Answer: A: Are joint tests of model coefficients in the limma package possible?
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
2.7k
views
Comment: C: summarizing shRNA data per gene with edgeR
10.2 years ago Ryan C. Thompson ★ 7.9k
2
votes
2
replies
2.7k
views
Answer: A: summarizing shRNA data per gene with edgeR
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
2
replies
2.7k
views
Comment: C: summarizing shRNA data per gene with edgeR
10.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
8.4k
views
Comment: C: Remove batch effect in small RNASeq study (SVA or others?)
updated 10.3 years ago by 52k • written 11.0 years ago by ★ 7.9k
0
votes
1
reply
8.4k
views
Comment: C: Remove batch effect in small RNASeq study (SVA or others?)
updated 10.3 years ago by 52k • written 11.0 years ago by ★ 7.9k
819 results • Page 12 of 17
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6