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Answer: A: Main effects in multi-level experiment in limma
9.0 years ago Ryan C. Thompson ★ 7.9k
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5.2k
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Comment: C: Using of limma moderated t-test with "corrected" expression matrix resulting fr
9.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: C: Correct use of arrayWeights alongside duplicateCorrelation for microarrays in Li
9.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Using of limma moderated t-test with "corrected" expression matrix resulting fr
9.0 years ago Ryan C. Thompson ★ 7.9k
1
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5.2k
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Comment: C: Using of limma moderated t-test with "corrected" expression matrix resulting fr
9.0 years ago Ryan C. Thompson ★ 7.9k
3
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5.2k
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Comment: C: Using of limma moderated t-test with "corrected" expression matrix resulting fr
9.0 years ago Ryan C. Thompson ★ 7.9k
1
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Comment: C: edgeR contrast formulation question
9.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR contrast formulation question
9.0 years ago Ryan C. Thompson ★ 7.9k
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8.9k
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Comment: C: Differential expression analysis: Continuous variables
9.0 years ago Ryan C. Thompson ★ 7.9k
2
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8.9k
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Answer: A: batch effect : comBat or blocking in limma ?
9.0 years ago Ryan C. Thompson ★ 7.9k
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8.9k
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Comment: C: batch effect : comBat or blocking in limma ?
9.0 years ago Ryan C. Thompson ★ 7.9k
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2.1k
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Comment: C: print matrix from EdgeR that are normalized by cpm and by spike-in
9.0 years ago Ryan C. Thompson ★ 7.9k
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1.5k
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Comment: C: edgeR and variance
9.0 years ago Ryan C. Thompson ★ 7.9k
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8.9k
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Comment: C: Differential expression analysis: Continuous variables
9.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: C: plotMDS in edgeR
9.0 years ago Ryan C. Thompson ★ 7.9k
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8.9k
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Comment: C: Differential expression analysis: Continuous variables
9.0 years ago Ryan C. Thompson ★ 7.9k
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8.9k
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Comment: C: Differential expression analysis: Continuous variables
9.0 years ago Ryan C. Thompson ★ 7.9k
4
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2
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1.9k
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Confusing error when running ChIPQC
chipqc chipseq
updated 9.0 years ago by ▴ 420 • written 9.0 years ago by ★ 7.9k
1
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1
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3.1k
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Answer: A: significance of changes in TMT proteomics data using vsn2 and limma
9.0 years ago Ryan C. Thompson ★ 7.9k
2
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8.9k
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Comment: C: Differential expression analysis: Continuous variable
9.0 years ago Ryan C. Thompson ★ 7.9k
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8.9k
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Comment: C: Differential expression analysis: Continuous variable
9.0 years ago Ryan C. Thompson ★ 7.9k
2
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1
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1.3k
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Answer: C: edgeR design matrix
9.0 years ago Ryan C. Thompson ★ 7.9k
3
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1.7k
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Comment: C: pass limma contrast matrix variable
9.0 years ago Ryan C. Thompson ★ 7.9k
2
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1.4k
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Answer: A: Technical and biological replates in BitSeq
9.0 years ago Ryan C. Thompson ★ 7.9k
1
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1.8k
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Comment: C: Support for offsets in cpm and voom functions?
9.0 years ago Ryan C. Thompson ★ 7.9k
5
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3
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1.8k
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Support for offsets in cpm and voom functions?
edgeR cpm voom limma
9.0 years ago Ryan C. Thompson ★ 7.9k
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2.0k
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Comment: C: deseq2 normalized data
9.0 years ago Ryan C. Thompson ★ 7.9k
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1.5k
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Comment: C: Problem regarding the explanation of log-fold changes of individual coefficients
9.0 years ago Ryan C. Thompson ★ 7.9k
2
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1
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1.5k
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Answer: A: Problem regarding the explanation of log-fold changes of individual coefficients
9.0 years ago Ryan C. Thompson ★ 7.9k
2
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1
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960
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Answer: A: Error when add `in` column into data.frame
9.1 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.9k
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Comment: C: Performance of different flavors of limma and edgeR as the sample size goes up
9.1 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.9k
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Comment: C: Performance of different flavors of limma and edgeR as the sample size goes up
9.1 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.9k
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Answer: A: Performance of different flavors of limma and edgeR as the sample size goes up
9.1 years ago Ryan C. Thompson ★ 7.9k
2
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1
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20k
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Answer: A: DESeq2 for ChIP-seq differential peaks
9.1 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: R Script for selecting differentially expressed genes
9.1 years ago Ryan C. Thompson ★ 7.9k
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3.7k
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Answer: A: R Script for selecting differentially expressed genes
9.1 years ago Ryan C. Thompson ★ 7.9k
1
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4.6k
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Answer: A: Effect size similar to Cohen's d in limma
9.1 years ago Ryan C. Thompson ★ 7.9k
2
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6.1k
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Answer: A: edgeR Normalization Method
9.1 years ago Ryan C. Thompson ★ 7.9k
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1
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4.5k
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Comment: C: Do the outputs of Limma's competitive gene set methods (camera, romer) require a
9.1 years ago Ryan C. Thompson ★ 7.9k
1
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1
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4.5k
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Answer: A: Do the outputs of Limma's competitive gene set methods (camera, romer) require a
9.1 years ago Ryan C. Thompson ★ 7.9k
3
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Answer: A: [DESeq2] is it ok to remove contaminant/sparse OTUs prior to DESeq analysis?
9.1 years ago Ryan C. Thompson ★ 7.9k
2
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2.6k
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Answer: A: [DESeq2] normalization doesn't remove my mean-variance trend
9.1 years ago Ryan C. Thompson ★ 7.9k
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5.0k
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Answer: A: All same padj of contrast results in the DESeq2
9.1 years ago Ryan C. Thompson ★ 7.9k
2
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2.5k
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Answer: A: Can DESeq correlate genes expression patterns with a numerical sample factor?
9.1 years ago Ryan C. Thompson ★ 7.9k
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1.1k
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Answer: A: DESeq2 input for PE data (Raw count-pairs or 2 x Raw count-pairs)
9.2 years ago Ryan C. Thompson ★ 7.9k
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3.7k
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Comment: C: Principal component plot of the RNAseq samples and DEseq2 result
9.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: ribosome profiling analysis with different dispersions
9.2 years ago Ryan C. Thompson ★ 7.9k
3
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2.3k
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Answer: A: ribosome profiling analysis with different dispersions
9.2 years ago Ryan C. Thompson ★ 7.9k
9
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6
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Independent filtering with unequal group sizes?
independent filtering edger deseq2
updated 9.2 years ago by ★ 28k • written 9.2 years ago by ★ 7.9k
0
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2.0k
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Comment: C: Independent filtering with unequal group sizes?
9.2 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 10 of 17
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