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Comment: Comment: filterbyexp() in edgeR
3 days ago Yunshun Chen ▴ 870
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1.6k
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Comment: Comment: filterbyexp() in edgeR
3 days ago Yunshun Chen ▴ 870
1
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224
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Answer: Answer: Inconsistent result in edgeR
15 days ago Yunshun Chen ▴ 870
2
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1
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743
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Answer: Answer: Comapre two groups in edgeR- Coefficient and logFC explanation
4 months ago Yunshun Chen ▴ 870
2
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1.3k
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
7 months ago Yunshun Chen ▴ 870
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614
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Answer: Answer: edgeR: Time course RNA-seq experiments
11 months ago Yunshun Chen ▴ 870
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1
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2.9k
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Answer: Answer: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c
18 months ago Yunshun Chen ▴ 870
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1
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1.2k
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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
23 months ago Yunshun Chen ▴ 870
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1
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1.2k
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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
23 months ago Yunshun Chen ▴ 870
0
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2
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1.2k
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Answer: Answer: statistics : edger or DESeq2 to asses the differential binding using the averag
23 months ago Yunshun Chen ▴ 870
2
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0
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1.6k
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Answer: Answer: filterbyexp() in edgeR
2.7 years ago Yunshun Chen ▴ 870
0
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0
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1.2k
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Job: Postdoctoral Scientist in Statistical Bioinformatics, WEHI, Melbourne, Australia
JobPosting
2.9 years ago Yunshun Chen ▴ 870
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4.5k
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Answer: Answer: differential expression for Single-cell RNAseq data using edgeR
3.2 years ago Yunshun Chen ▴ 870
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0
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992
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Comment: Comment: Confusion using edgeR and spline-fitted data
3.3 years ago Yunshun Chen ▴ 870
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992
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Answer: Answer: Confusion using edgeR and spline-fitted data
3.3 years ago Yunshun Chen ▴ 870
1
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0
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830
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Answer: Answer: edgeR & blocking with complex experimental design
3.4 years ago Yunshun Chen ▴ 870
1
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0
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2.0k
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Answer: Answer: How can I get a list of the DE genes from edgeR?
3.6 years ago Yunshun Chen ▴ 870
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1
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1.1k
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Answer: Answer: Help creating a paired sample design matrix in edgeR
3.7 years ago Yunshun Chen ▴ 870
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0
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3.2k
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Comment: Comment: Calculation of logFC in edgeR
3.7 years ago Yunshun Chen ▴ 870
2
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3.2k
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Answer: Answer: Calculation of logFC in edgeR
3.7 years ago Yunshun Chen ▴ 870
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1
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1.4k
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Comment: Comment: edgeR model matrix with 3 factors and interactions
3.7 years ago Yunshun Chen ▴ 870
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1
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1.4k
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Comment: Comment: edgeR model matrix with 3 factors and interactions
3.7 years ago Yunshun Chen ▴ 870
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1
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1.0k
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Answer: Answer: Question regarding lib.sizes when using glmQLFit
3.7 years ago Yunshun Chen ▴ 870
1
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0
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721
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Answer: Comment: Additive Model for Variable Adjustment in edgeR
3.8 years ago Yunshun Chen ▴ 870
3
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1
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2.3k
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Answer: Answer: edgeR supports continuous covariates?
3.9 years ago Yunshun Chen ▴ 870
0
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0
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2.6k
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Comment: C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
4.0 years ago Yunshun Chen ▴ 870
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1
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2.6k
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Comment: C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
4.0 years ago Yunshun Chen ▴ 870
0
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1
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2.6k
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Comment: C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
4.0 years ago Yunshun Chen ▴ 870
2
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1
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2.6k
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Answer: A: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
4.0 years ago Yunshun Chen ▴ 870
2
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0
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9.1k
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Comment: C: how to understand cpm=1 and how filterByExpr works?
4.1 years ago Yunshun Chen ▴ 870
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0
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2.0k
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Answer: A: "Error in xy.coords(x, y, setLab = FALSE) : 'x' and 'y' lengths differ" using gl
4.2 years ago Yunshun Chen ▴ 870
1
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0
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618
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Answer: A: edgeR DGEList model matrix and experiment design
4.5 years ago Yunshun Chen ▴ 870
1
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0
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1.4k
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Answer: A: RNAseq analysis with edgeR-interaction terms and comparison within and between g
4.5 years ago Yunshun Chen ▴ 870
2
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1
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3.7k
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Answer: A: Including multiple covariates in edgeR
4.6 years ago Yunshun Chen ▴ 870
0
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0
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1.3k
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Comment: C: EdgeR - How to define a group when calculating BCV
4.6 years ago Yunshun Chen ▴ 870
1
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1
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1.3k
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Answer: A: EdgeR - How to define a group when calculating BCV
4.6 years ago Yunshun Chen ▴ 870
1
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1
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2.1k
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Comment: C: adding "symbol" column in my differential expressed genes in EdgeR
4.9 years ago Yunshun Chen ▴ 870
0
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1
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2.1k
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Answer: A: adding "symbol" column in my differential expressed genes in EdgeR
4.9 years ago Yunshun Chen ▴ 870
2
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0
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2.1k
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Answer: A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
4.9 years ago Yunshun Chen ▴ 870
1
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1
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782
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Answer: A: Nested Interaction in edgeR and composition bias
4.9 years ago Yunshun Chen ▴ 870
1
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0
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889
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Answer: A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
4.9 years ago Yunshun Chen ▴ 870
3
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1
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619
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Answer: A: Can't get function plotExonJunc to work?
5.0 years ago Yunshun Chen ▴ 870
5
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2
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2.0k
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Answer: A: EdgeR - Complex design - contrasts/coefficients
5.1 years ago Yunshun Chen ▴ 870
2
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1
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1.5k
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Answer: A: is our edgeR code doing what we think it does?
5.1 years ago Yunshun Chen ▴ 870
0
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0
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3.2k
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Answer: A: edgeR DGEList and design matrix
5.2 years ago Yunshun Chen ▴ 870
2
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1
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3.5k
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Answer: A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
8.2 years ago Yunshun Chen ▴ 870
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1
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1.9k
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Answer: A: problems when installing edgeR
8.2 years ago Yunshun Chen ▴ 870
1
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0
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1.1k
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Answer: A: Treat p > 1
8.3 years ago Yunshun Chen ▴ 870
1
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2
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4.4k
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Comment: C: Setting up the Design Matrix
8.7 years ago Yunshun Chen ▴ 870
2
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2
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4.4k
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Answer: A: Setting up the Design Matrix
8.7 years ago Yunshun Chen ▴ 870
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