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tri.counts.method parameter in deconstructSigs
deconstructsigs
updated 5.7 years ago by 0 • written 7.7 years ago by ▴ 90
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4
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1.5k
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Gene clusters based on gene expression across samples
kmeans gene expression clustering
7.0 years ago • updated 6.9 years ago Jane Merlevede ▴ 90
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0
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1.5k
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Answer: A: Gene clusters based on gene expression across samples
6.9 years ago Jane Merlevede ▴ 90
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0
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1.5k
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Answer: A: Gene clusters based on gene expression across samples
6.9 years ago Jane Merlevede ▴ 90
0
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0
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1.5k
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Comment: C: Gene clusters based on gene expression across samples
7.0 years ago Jane Merlevede ▴ 90
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0
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6.9k
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Comment: C: Sample-to-sample distance matrix using heatmap.2
7.0 years ago Jane Merlevede ▴ 90
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1
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6.9k
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Comment: A: Sample-to-sample distance matrix using heatmap.2
7.0 years ago Jane Merlevede ▴ 90
0
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4
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6.9k
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Sample-to-sample distance matrix using heatmap.2
heatmap.2 gplots DESeq2
7.0 years ago Jane Merlevede ▴ 90
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0
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2.3k
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Comment: C: DESeq2 - experimental design with 2 variables
7.1 years ago Jane Merlevede ▴ 90
0
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1
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2.3k
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Comment: C: DESeq2 - experimental design with 2 variables
7.1 years ago Jane Merlevede ▴ 90
0
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1
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2.3k
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Comment: A: DESeq2 - experimental design with 2 variables
7.1 years ago Jane Merlevede ▴ 90
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7
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2.3k
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DESeq2 - experimental design with 2 variables
deseq2 multiple factor design
7.1 years ago Jane Merlevede ▴ 90
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0
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2.3k
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Comment: A: DESeq2 - experimental design with 2 variables
7.1 years ago Jane Merlevede ▴ 90
1
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4
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3.4k
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clusterProfiler - interpretation of enrichMap
clusterprofiler
updated 7.1 years ago by • 0 • written 7.9 years ago by ▴ 90
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0
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3.3k
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Comment: C: DESeq2 - PCAplot differs between rlog and vsd transformation
7.2 years ago Jane Merlevede ▴ 90
0
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1
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3.3k
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Answer: A: DESeq2 - PCAplot differs between rlog and vsd transformation
7.2 years ago Jane Merlevede ▴ 90
2
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4
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3.3k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
7.2 years ago Jane Merlevede ▴ 90
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0
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4.1k
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Comment: C: DESeq2 minReplicatesForReplace with different group size
7.3 years ago Jane Merlevede ▴ 90
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1
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4.1k
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Comment: C: DESeq2 minReplicatesForReplace with different group size
7.3 years ago Jane Merlevede ▴ 90
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1
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4.1k
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Comment: A: DESeq2 minReplicatesForReplace with different group size
7.4 years ago Jane Merlevede ▴ 90
2
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6
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4.1k
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DESeq2 minReplicatesForReplace with different group size
DESeq2
7.4 years ago Jane Merlevede ▴ 90
0
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0
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937
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ConsensusClusterPlus - Intrepretation of item & cluster consensus plots
ConsensusClusterPlus
7.8 years ago Jane Merlevede ▴ 90
0
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0
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1.5k
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ConsensusClusterPlus - add labels to plot
consensusclusterplus
7.8 years ago Jane Merlevede ▴ 90
0
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0
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3.1k
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Comment: C: clusterProfiler - get symbol from GSEA results
7.9 years ago Jane Merlevede ▴ 90
1
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5
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3.1k
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clusterProfiler - get symbol from GSEA results
clusterProfiler
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 90
0
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0
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3.1k
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Comment: C: clusterProfiler - get symbol from GSEA results
7.9 years ago Jane Merlevede ▴ 90
0
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1
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4.8k
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Comment: C: clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplo
7.9 years ago Jane Merlevede ▴ 90
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1
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4.8k
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Answer: A: clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplo
7.9 years ago Jane Merlevede ▴ 90
3
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7
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4.8k
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clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplot
clusterProfiler
7.9 years ago Jane Merlevede ▴ 90
0
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1
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4.8k
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Answer: A: clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplo
7.9 years ago Jane Merlevede ▴ 90
0
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0
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3.1k
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Comment: C: clusterProfiler - difference in the number of genes from input and enrichGO resu
7.9 years ago Jane Merlevede ▴ 90
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0
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3.6k
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Comment: C: clusterProfiler - qvalue adjustment method in enricher()
7.9 years ago Jane Merlevede ▴ 90
1
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2
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3.1k
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clusterProfiler - difference in the number of genes from input and enrichGO results
clusterProfiler
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 90
0
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2
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3.6k
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clusterProfiler - qvalue adjustment method in enricher()
clusterProfiler
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 90
0
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0
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3.4k
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Answer: A: clusterProfiler - interpretation of enrichMap
7.9 years ago Jane Merlevede ▴ 90
0
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0
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2.6k
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Answer: A: clusterProfiler - interpretation of plotGOgraph
7.9 years ago Jane Merlevede ▴ 90
0
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2
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2.6k
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clusterProfiler - interpretation of plotGOgraph
clusterprofiler topgo
7.9 years ago Jane Merlevede ▴ 90
0
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0
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8.1k
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Answer: A: clusterProfiler - how does showCategory work in dotplot from compareClusterResul
7.9 years ago Jane Merlevede ▴ 90
0
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3
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8.1k
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clusterProfiler - how does showCategory work in dotplot from compareClusterResult class?
clusterprofiler
7.9 years ago Jane Merlevede ▴ 90
0
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0
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1.6k
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Comment: C: Help for defining design and contrasts of shRNA screen data
8.1 years ago Jane Merlevede ▴ 90
0
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1
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1.6k
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Comment: C: Help for defining design and contrasts of shRNA screen data
8.1 years ago Jane Merlevede ▴ 90
0
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1
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1.6k
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Comment: C: Help for defining design and contrasts of shRNA screen data
8.1 years ago Jane Merlevede ▴ 90
0
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1
reply
1.6k
views
Comment: C: Help for defining design and contrasts of shRNA screen data
8.1 years ago Jane Merlevede ▴ 90
0
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1
reply
1.6k
views
Comment: C: Help for defining design and contrasts of shRNA screen data
8.1 years ago Jane Merlevede ▴ 90
0
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1
reply
1.6k
views
Comment: C: Help for defining design and contrasts of shRNA screen data
8.1 years ago Jane Merlevede ▴ 90
1
vote
12
replies
1.6k
views
Help for defining design and contrasts of shRNA screen data
edgeR design and contrast matrix
updated 8.1 years ago by ★ 28k • written 8.1 years ago by ▴ 90
0
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0
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2.0k
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Answer: A: Analysis of shRNA screen data
8.2 years ago Jane Merlevede ▴ 90
2
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2
replies
2.0k
views
Analysis of shRNA screen data
shrna edger deseq2 differential expression normalized counts
8.2 years ago Jane Merlevede ▴ 90
0
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0
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1.5k
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Comment: C: Common dispersion from estimateGLMRobustDisp()
8.3 years ago Jane Merlevede ▴ 90
1
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2
replies
1.5k
views
Common dispersion from estimateGLMRobustDisp()
edgeR dispersion
updated 8.3 years ago by ★ 28k • written 8.3 years ago by ▴ 90
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