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Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
updated 10.3 years ago by ★ 3.6k • written 10.3 years ago by ★ 13k
0
votes
3
replies
1.8k
views
parallel BAM sorting with Rsamtools
updated 10.3 years ago by ★ 7.9k • written 10.3 years ago by ★ 13k
0
votes
5
replies
2.2k
views
How does MEDIPS handle multiple mapping of a read
MEDIPS MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ★ 13k
0
votes
5
replies
2.2k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 10.3 years ago by ▴ 130 • written 10.3 years ago by ★ 13k
0
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1
reply
3.7k
views
DESeq2 design
updated 10.3 years ago by 43k • written 10.3 years ago by ★ 13k
0
votes
5
replies
2.1k
views
Single sample normalization of single-channel Agilent microarrays
affy frma SCAN.UPC affy frma SCAN.UPC
updated 10.3 years ago by ★ 7.9k • written 10.3 years ago by ★ 13k
0
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1
reply
1.5k
views
readRNAMultipleAlignmen - filepath
updated 10.3 years ago by ▴ 210 • written 10.3 years ago by ★ 13k
0
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1
reply
1.3k
views
DESeq
GO DESeq GO DESeq
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
0
votes
3
replies
1.1k
views
Robustspline and two dimentional loess for two color agilent data
Normalization Normalization
updated 10.3 years ago by 52k • written 10.3 years ago by ★ 13k
0
votes
1
reply
814
views
Plate config for 1536 plate into cellHTS2
updated 10.3 years ago by ▴ 160 • written 10.3 years ago by ★ 13k
0
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3
replies
1.2k
views
Taking out a plate from a HTS analysis
Annotation Annotation
updated 10.3 years ago by ▴ 10 • written 10.3 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Model Design
edgeR edgeR
updated 10.3 years ago by 67k • written 10.3 years ago by ★ 13k
0
votes
3
replies
4.5k
views
R package not available for R v3.1.1
updated 10.3 years ago by 21k • written 10.4 years ago by ★ 13k
0
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1
reply
2.0k
views
Protein position to genomic location
GenomicFeatures GenomicFeatures
updated 10.4 years ago by 1.6k • written 10.4 years ago by ★ 13k
0
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0
replies
1.1k
views
gpQuality and readGPR errors for Microarrays [arrayQuality Package]
Microarray Microarray
10.4 years ago Guest User ★ 13k
0
votes
3
replies
1.9k
views
sampleSheet problem in beadArray
beadarray beadarray
updated 10.4 years ago by 67k • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.4k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 10.4 years ago by 43k • written 10.4 years ago by ★ 13k
0
votes
2
replies
1.5k
views
GWASTools: assocTestRegression, forcing the analysis to use reference allele
GWASTools GWASTools
updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ★ 13k
0
votes
2
replies
910
views
problems running DEseq2
DESeq2 DESeq2
updated 10.4 years ago by 43k • written 10.4 years ago by ★ 13k
0
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0
replies
1.6k
views
Answer: A: GO enrichment
10.4 years ago Guest User ★ 13k
0
votes
1
reply
1.6k
views
GO enrichment
GO Category goseq GO Category goseq
10.4 years ago Guest User ★ 13k
0
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4
replies
4.5k
views
warning with lmFit command in limma
Microarray limma Microarray limma
updated 10.4 years ago by 52k • written 10.4 years ago by ★ 13k
0
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4
replies
2.0k
views
False positives due to GC content correction - DESeq2
EDASeq DESeq2 EDASeq DESeq2
updated 10.4 years ago by 43k • written 10.4 years ago by ★ 13k
0
votes
0
replies
851
views
gpQuality Error
10.4 years ago Guest User ★ 13k
0
votes
1
reply
1.6k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 10.4 years ago by 21k • written 10.4 years ago by ★ 13k
0
votes
2
replies
2.5k
views
Combat: Removing multiple batch effects
limma limma
updated 10.4 years ago by ★ 7.9k • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.2k
views
spike-in normalization with NormiR
Normalization GO probe Normalization GO probe
updated 10.4 years ago by 67k • written 10.4 years ago by ★ 13k
0
votes
3
replies
705
views
More than one package document with the same name
updated 10.4 years ago by ★ 1.3k • written 10.4 years ago by ★ 13k
0
votes
0
replies
1.7k
views
Error in keggPathwayGraphs when updateCache = TRUE
Pathways ROntoTools Pathways ROntoTools
10.4 years ago Guest User ★ 13k
0
votes
3
replies
1.6k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.2k
views
NuPoP cannot recognize my fasta file
BSgenome BSgenome NuPoP BSgenome BSgenome NuPoP
updated 10.4 years ago by ▴ 90 • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.5k
views
non-CpG methylated regions and strand information in MEDIPS output
BSgenome annotate biomaRt BSgenome MEDIPS BSgenome annotate biomaRt BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ★ 13k
0
votes
7
replies
5.8k
views
DESeq2, problems using list argument to extract results from DESeq
DESeq DESeq
updated 10.4 years ago by ▴ 260 • written 10.5 years ago by ★ 13k
0
votes
2
replies
1.3k
views
Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 10.4 years ago by 21k • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.5k
views
vsn normalization in Ringo package
Normalization vsn Ringo Normalization vsn Ringo
updated 10.4 years ago by ▴ 10 • written 10.4 years ago by ★ 13k
0
votes
0
replies
683
views
DNAcopy question
10.4 years ago Guest User ★ 13k
0
votes
9
replies
3.0k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 10.4 years ago by ▴ 830 • written 10.4 years ago by ★ 13k
0
votes
0
replies
1.0k
views
Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
10.4 years ago Guest User ★ 13k
0
votes
0
replies
862
views
'RankMerging' changes sample names
GO GO
10.4 years ago Guest User ★ 13k
1
vote
0
replies
3.8k
views
Batch effect confounded with additional covariate
10.4 years ago Guest User ★ 13k
0
votes
4
replies
3.8k
views
rlog() not in DESeq2?
DESeq DESeq2 DESeq DESeq2
updated 10.4 years ago by 43k • written 10.4 years ago by ★ 13k
0
votes
4
replies
1.2k
views
Please comment the way I'm thinking about the way to find differentially expressed genes
updated 10.4 years ago by 21k • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.0k
views
limma contrast.matrix and design with "common reference"
GO limma GO limma
updated 10.4 years ago by 67k • written 10.4 years ago by ★ 13k
0
votes
3
replies
1.7k
views
Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 10.4 years ago by 21k • written 10.4 years ago by ★ 13k
0
votes
3
replies
1.2k
views
SomaticSignatures: could not find function "motifMatrix"
BSgenome BSgenome BSgenome BSgenome
updated 10.4 years ago by ★ 1.3k • written 10.4 years ago by ★ 13k
1
vote
1
reply
2.5k
views
How to hide or suppress note about ward method in clValid package?
Annotation PROcess Annotation PROcess
updated 10.4 years ago by ★ 1.3k • written 10.4 years ago by ★ 13k
0
votes
2
replies
2.2k
views
RNAseq expression threshold using DESeq2 normalised counts
RNASeq RNASeq
updated 10.4 years ago by 43k • written 10.4 years ago by ★ 13k
0
votes
1
reply
764
views
Error while loading library GeneExpressionSignature
updated 10.4 years ago by ▴ 10 • written 10.4 years ago by ★ 13k
0
votes
2
replies
1.6k
views
Problem in generating heatmap after R and Bioconductor Update
updated 10.4 years ago by ▴ 210 • written 10.4 years ago by ★ 13k
1
vote
2
replies
2.5k
views
Interaction term logFC
RNASeq GO DESeq2 RNASeq GO DESeq2
updated 10.4 years ago by 67k • written 10.4 years ago by ★ 13k
1,206 results • Page 2 of 25
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