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Answer: A: Custom regions in assignChromosomeRegion?
7.1 years ago Ou, Jianhong ★ 1.3k
2
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1
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1.1k
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Answer: A: motifStack: how to make the start of motif logos have the same distance to the c
7.2 years ago Ou, Jianhong ★ 1.3k
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1.5k
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Answer: A: Identification of Overrepresented Transcription Factor Binding Motifs in the Pro
7.2 years ago Ou, Jianhong ★ 1.3k
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0
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1.2k
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Answer: A: Attempts to create a lolliplot from 1000 genomes .popvcf file using trackViewer
7.2 years ago Ou, Jianhong ★ 1.3k
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1.3k
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Answer: A: ATACseqQC needs too much memory
7.3 years ago Ou, Jianhong ★ 1.3k
1
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1.8k
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Answer: A: ChIPpeakAnno binOverGene error
7.3 years ago Ou, Jianhong ★ 1.3k
1
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1
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12k
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Answer: A: How to change seqlevels in a GRanges object
7.7 years ago Ou, Jianhong ★ 1.3k
3
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1
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1.6k
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Answer: A: Annotation Database for ChIPpeakAnno
7.7 years ago Ou, Jianhong ★ 1.3k
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1.2k
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Answer: A: trackviewer lolliplot pie.stack
7.7 years ago Ou, Jianhong ★ 1.3k
1
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4.6k
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Answer: A: mm10 phastCons data for use with ATACseqQC
7.8 years ago Ou, Jianhong ★ 1.3k
2
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0
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7.9k
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Comment: C: Error in GRanges: could not find symbol "recursive" in environment of the generi
8.0 years ago • updated 7.9 years ago Ou, Jianhong ★ 1.3k
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2.6k
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Answer: A: RNAseq read coverage plot: What tool?
7.9 years ago Ou, Jianhong ★ 1.3k
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2.9k
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Comment: C: ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is d
7.9 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.9k
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Answer: A: ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is d
7.9 years ago Ou, Jianhong ★ 1.3k
2
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1
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3.9k
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Answer: A: ChIPpeakAnno, MACS format annotation
7.9 years ago Ou, Jianhong ★ 1.3k
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1.1k
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Comment: C: question about summrizeOverlaps
8.0 years ago Ou, Jianhong ★ 1.3k
2
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2
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1.1k
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question about summrizeOverlaps
summarizeoverlaps
updated 8.0 years ago by 25k • written 8.0 years ago by ★ 1.3k
1
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1.8k
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Answer: A: ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
8.2 years ago Ou, Jianhong ★ 1.3k
1
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1.8k
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Answer: A: ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
8.2 years ago Ou, Jianhong ★ 1.3k
0
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0
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3.3k
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Comment: C: ChIPpeakAnno-problem exporting data due to "arguments imply differing number of
8.2 years ago Ou, Jianhong ★ 1.3k
1
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0
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3.3k
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Answer: A: ChIPpeakAnno-problem exporting data due to "arguments imply differing number of
8.2 years ago Ou, Jianhong ★ 1.3k
3
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1.8k
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Answer: A: How to fix ChIPPeakAnno error in adding gene names to annotated peaks?
8.3 years ago Ou, Jianhong ★ 1.3k
0
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0
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3.0k
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Answer: A: problem to load data into ChIPpeakAnno
8.3 years ago Ou, Jianhong ★ 1.3k
1
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1
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4.2k
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Comment: C: Error with ChIPpeakAnno Ensembl annotation
8.3 years ago Ou, Jianhong ★ 1.3k
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0
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2.2k
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Answer: A: Convert HOMER motif matrix to pfm?
8.5 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.0k
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Answer: A: Plotting protein position weighted matrices in seqLogo and DiffLogo
8.7 years ago Ou, Jianhong ★ 1.3k
1
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1
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4.0k
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Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
8.7 years ago Ou, Jianhong ★ 1.3k
2
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1
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9.6k
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Answer: A: Find overlap for more than 2 GRanges object simultaneously (reproducible example
9.0 years ago Ou, Jianhong ★ 1.3k
0
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0
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4.3k
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Comment: C: ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
9.0 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.4k
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Answer: A: motifStack crashes for example from documentation
9.1 years ago Ou, Jianhong ★ 1.3k
1
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0
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1.9k
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Comment: C: ChIPpeakAnno annotatePeakInBatch output
9.1 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.9k
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Comment: C: ChIPpeakAnno annotatePeakInBatch output
9.1 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.0k
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Comment: C: ChIPpeakAnno getAnnotation request fail
9.1 years ago Ou, Jianhong ★ 1.3k
1
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0
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2.0k
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Comment: C: ChIPpeakAnno getAnnotation request fail
9.1 years ago Ou, Jianhong ★ 1.3k
1
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1
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2.0k
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Comment: C: ChIPpeakAnno getAnnotation request fail
9.1 years ago Ou, Jianhong ★ 1.3k
0
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1
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6.3k
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Comment: C: package ‘TCGAbiolinks’ is not available (for R version 3.2.0)
9.1 years ago Ou, Jianhong ★ 1.3k
1
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0
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12k
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Comment: C: annotate GRanges with upstream or downstream nearest gene
9.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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12k
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Answer: A: annotate GRanges with upstream or downstream nearest gene
9.2 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.6k
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Comment: C: ChIPpeakAnno (makeVennDiagram) giving different results than before
9.3 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.6k
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Answer: A: ChIPpeakAnno (makeVennDiagram) giving different results than before
9.3 years ago Ou, Jianhong ★ 1.3k
1
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0
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2.3k
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Answer: A: ChIP-seq, peak annotation using ChIPpeakAnno
9.3 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.3k
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Comment: C: Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
9.3 years ago Ou, Jianhong ★ 1.3k
1
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1
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2.3k
views
Answer: A: Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
9.4 years ago Ou, Jianhong ★ 1.3k
2
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0
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3.0k
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Answer: A: org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
9.4 years ago Ou, Jianhong ★ 1.3k
2
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1
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3.0k
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Answer: A: Assign genes to CpG islands
9.4 years ago Ou, Jianhong ★ 1.3k
1
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4
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2.2k
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how to install Rsamtools in bioconductor/devel_base docker
docker Rsamtools
9.6 years ago Ou, Jianhong ★ 1.3k
0
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1
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5.7k
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Comment: C: annotatePeak() in ChIPseeker - how long does it take to run?
9.6 years ago Ou, Jianhong ★ 1.3k
0
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0
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5.7k
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Answer: A: annotatePeak() in ChIPseeker - how long does it take to run?
9.6 years ago Ou, Jianhong ★ 1.3k
0
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0
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4.9k
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Answer: A: How to annotate gene names for genomic coordinates?
9.7 years ago Ou, Jianhong ★ 1.3k
1
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0
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4.3k
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Answer: A: ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
9.8 years ago Ou, Jianhong ★ 1.3k
228 results • Page 3 of 5
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