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3.0k
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Comment: Comment: Too much data for Diffbind
9 weeks ago Ou, Jianhong ★ 1.3k
0
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1
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1.2k
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Comment: Comment: ATACseqQC shiftGAlignmentsList() problem
9 months ago Ou, Jianhong ★ 1.3k
0
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0
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696
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Comment: Comment: ATACseqTFEA - preparebindingSites() for whole genome?
10 months ago Ou, Jianhong ★ 1.3k
0
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1
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696
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Comment: Comment: ATACseqTFEA - preparebindingSites() for whole genome?
10 months ago Ou, Jianhong ★ 1.3k
0
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1
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1.2k
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Answer: Answer: ATACseqQC shiftGAlignmentsList() problem
12 months ago Ou, Jianhong ★ 1.3k
0
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0
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1.2k
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Comment: Comment: ATACseqQC shiftGAlignmentsList() problem
12 months ago Ou, Jianhong ★ 1.3k
0
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1
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1.2k
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Comment: Comment: ATACseqQC shiftGAlignmentsList() problem
12 months ago Ou, Jianhong ★ 1.3k
0
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1
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696
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Answer: Answer: ATACseqTFEA - preparebindingSites() for whole genome?
13 months ago Ou, Jianhong ★ 1.3k
0
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0
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458
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Comment: Comment: Incorrect display of Y-axis
13 months ago Ou, Jianhong ★ 1.3k
2
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2
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2.2k
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Answer: Answer: How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
20 months ago Ou, Jianhong ★ 1.3k
0
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0
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777
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Comment: Comment: Error in ATACseqQC bamQC analysis
23 months ago Ou, Jianhong ★ 1.3k
1
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0
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782
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Answer: Answer: Interpretation of $vennCounts output "Others"
24 months ago Ou, Jianhong ★ 1.3k
0
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0
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876
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Comment: Comment: AssignChromosomeRegion not working in Rstudio 4.2
2.6 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.0k
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Comment: Comment: motifStack Plotting the correct data positions on x axis
2.8 years ago Ou, Jianhong ★ 1.3k
2
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1
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1.0k
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Answer: Answer: motifStack Plotting the correct data positions on x axis
2.8 years ago Ou, Jianhong ★ 1.3k
1
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0
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1.2k
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Comment: Comment: trackViewer assigning track colors
2.9 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.9k
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Comment: Comment: Problem converting a bed file to granges using togranges chippeakanno
2.9 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Comment: Comment: TSSEscore function in ATACseqQC package
2.9 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Comment: Comment: TSSEscore function in ATACseqQC package
2.9 years ago Ou, Jianhong ★ 1.3k
1
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2
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1.7k
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Comment: Comment: TSSEscore function in ATACseqQC package
2.9 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.4k
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Answer: Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"])
3.1 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.6k
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Answer: Answer: trackViewer peak visualization
3.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.3k
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Answer: Answer: trackViewer bigWig smoothing
3.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.2k
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Answer: Answer: trackViewer font
3.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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879
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Hard coding in DiffBind DBA.R line 968
DiffBind
updated 3.5 years ago by ★ 5.2k • written 3.5 years ago by ★ 1.3k
0
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0
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4.4k
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Comment: Comment: No peak corresponding to the nucleosome-free regions is observed in Fragment siz
3.6 years ago Ou, Jianhong ★ 1.3k
0
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1
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4.4k
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Comment: Comment: No peak corresponding to the nucleosome-free regions is observed in Fragment siz
3.6 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.2k
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Answer: Answer: ribosomeProfilingQC - countReads function - is it possible to consider library
3.8 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.2k
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Comment: Comment: ribosomeProfilingQC - countReads function - is it possible to consider library
3.8 years ago Ou, Jianhong ★ 1.3k
0
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0
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922
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Comment: Comment: trackViewer: File format detection
4.0 years ago Ou, Jianhong ★ 1.3k
0
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1
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922
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Answer: Answer: trackViewer: File format detection
4.0 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.4k
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Comment: C: How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQ
4.3 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.3k
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Answer: A: ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
4.3 years ago Ou, Jianhong ★ 1.3k
1
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0
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11k
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Answer: A: Interpreting TSS Enrichment Score Summary
4.3 years ago Ou, Jianhong ★ 1.3k
2
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1
reply
1.0k
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Comment: C: how to suppress makeVennDiagram plot
4.4 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.2k
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Comment: C: Subsampling when adjusting the read start sites in the ATACseqQC guide
4.4 years ago Ou, Jianhong ★ 1.3k
1
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2
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1.2k
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Comment: C: Subsampling when adjusting the read start sites in the ATACseqQC guide
4.4 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.7k
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Comment: C: ATACSeqQC - error when splitting files using mm10
4.5 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Comment: C: ATACSeqQC - error when splitting files using mm10
4.6 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Comment: C: ATACSeqQC - error when splitting files using mm10
4.6 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.8k
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Comment: C: ATAC-QC shiftGAlignmentsList function
4.7 years ago Ou, Jianhong ★ 1.3k
0
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0
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600
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Comment: C: ATACseqQC and Rsamtools scanBam
4.7 years ago Ou, Jianhong ★ 1.3k
1
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0
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543
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Answer: C: Virus found in GeneNetworkBuilder_1.28.1.tar.gz
4.9 years ago Ou, Jianhong ★ 1.3k
0
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0
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959
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Comment: C: TrackViewer Vignette Err: attr must be a slot name of xscale object
5.0 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.3k
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Comment: C: trackViewer: how to make lolliplots for methylation data
5.1 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.3k
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Comment: C: trackViewer: how to make lolliplots for methylation data
5.1 years ago Ou, Jianhong ★ 1.3k
0
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0
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766
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Answer: A: Can I use trackViewer to generate methylation lolliops with my own gene models a
5.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.4k
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Answer: A: Error in running ATACseqQC
5.2 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.0k
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Comment: C: ATACseqQC installation fails at shiny step
5.3 years ago Ou, Jianhong ★ 1.3k
0
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1
reply
2.0k
views
Comment: C: ATACseqQC installation fails at shiny step
5.3 years ago Ou, Jianhong ★ 1.3k
228 results • Page 1 of 5
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