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Answer: A: Odd behaviour with renameSeqlevels
12.4 years ago Valerie Obenchain ★ 6.8k
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Comment: C: GRangesList filtering
12.4 years ago Valerie Obenchain ★ 6.8k
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5.7k
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Answer: A: GRangesList filtering
12.4 years ago Valerie Obenchain ★ 6.8k
0
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889
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Answer: A: Subset of samples with VariantAnnotation::readVcf
12.4 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Problems with section 3.4 in vignette GenomicRangesUseCases.pdf
12.4 years ago Valerie Obenchain ★ 6.8k
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2.8k
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Comment: C: problems with strand in predictCoding
12.4 years ago Valerie Obenchain ★ 6.8k
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2.8k
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Comment: C: problems with strand in predictCoding
12.4 years ago Valerie Obenchain ★ 6.8k
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1.4k
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Comment: C: Complementing alleles in a VCF
12.4 years ago Valerie Obenchain ★ 6.8k
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977
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Comment: C: VariantAnnotation updated - error in predictCoding
12.4 years ago Valerie Obenchain ★ 6.8k
0
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977
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Answer: A: VariantAnnotation updated - error in predictCoding
12.4 years ago Valerie Obenchain ★ 6.8k
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1.4k
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distanceToNearest for GRanges?
Cancer GenomicRanges Cancer GenomicRanges
updated 12.5 years ago by ▴ 420 • written 12.5 years ago by ★ 6.8k
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Answer: A: VariantAnnotation locateVariants - meaning of precedesID and followsID
12.5 years ago Valerie Obenchain ★ 6.8k
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1.4k
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Comment: C: distanceToNearest for GRanges?
12.5 years ago Valerie Obenchain ★ 6.8k
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0
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1.1k
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Answer: A: flowClust problem
12.5 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Comment: C: How to convert from IRanges(List) to Rle(List)
12.5 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Comment: C: How to convert from IRanges(List) to Rle(List)
12.5 years ago Valerie Obenchain ★ 6.8k
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981
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Comment: C: GenomicRanges::summarizeOverlaps without strands?
12.5 years ago Valerie Obenchain ★ 6.8k
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2
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1.3k
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Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 12.5 years ago by ★ 1.7k • written 12.5 years ago by ★ 6.8k
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2.5k
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Comment: C: Recommended gene model for DESeq
12.5 years ago Valerie Obenchain ★ 6.8k
0
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0
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738
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Answer: A: VariantAnnotation's predictCoding (via getTranscriptSeqs) calls makeUCSCTxListFr
12.5 years ago Valerie Obenchain ★ 6.8k
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0
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831
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Comment: C: Looks like a bug in GenomicRanges::.breakTie
12.5 years ago Valerie Obenchain ★ 6.8k
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831
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Answer: A: Looks like a bug in GenomicRanges::.breakTie
12.5 years ago Valerie Obenchain ★ 6.8k
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1.1k
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Comment: C: distanceToNearest for GRanges?
12.5 years ago Valerie Obenchain ★ 6.8k
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2.6k
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Comment: C: Copy number analysis
12.5 years ago Valerie Obenchain ★ 6.8k
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1.8k
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Comment: C: error in locateVariants for a GRanges object
12.6 years ago Valerie Obenchain ★ 6.8k
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1
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1.8k
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Comment: C: error in locateVariants for a GRanges object
12.6 years ago Valerie Obenchain ★ 6.8k
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1.5k
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Comment: C: Finding coding SNPs with predictCoding
12.6 years ago Valerie Obenchain ★ 6.8k
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5
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1.5k
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Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 12.6 years ago by ★ 1.7k • written 12.6 years ago by ★ 6.8k
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1.5k
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Comment: C: Finding coding SNPs with predictCoding
12.6 years ago Valerie Obenchain ★ 6.8k
0
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1
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871
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countOverlaps within Mode Counting
Cancer Cancer
updated 12.6 years ago by ★ 1.5k • written 12.6 years ago by ★ 6.8k
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2.2k
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Answer: A: summarizeOverlaps vs countOverlaps
12.6 years ago Valerie Obenchain ★ 6.8k
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3.1k
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Answer: A: summarizeOverlaps vs countOverlaps
12.6 years ago Valerie Obenchain ★ 6.8k
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0
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1.6k
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Comment: C: Strand information for dbSNP packages
12.6 years ago Valerie Obenchain ★ 6.8k
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1
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1.6k
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Answer: A: Strand information for dbSNP packages
12.6 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.5k
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Answer: A: Finding coding SNPs with predictCoding
12.6 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.5k
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Comment: C: Finding coding SNPs with predictCoding
12.6 years ago Valerie Obenchain ★ 6.8k
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1
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1.2k
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Answer: A: Biostrings - pairwiseAlignment trimmed pattern returned
12.6 years ago Valerie Obenchain ★ 6.8k
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0
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1.2k
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Comment: C: clippda: a package for clinical proteomics data analysis
12.6 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Answer: A: htSeqTools errors
12.6 years ago Valerie Obenchain ★ 6.8k
0
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1
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1.2k
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Answer: A: clippda: a package for clinical proteomics data analysis
12.6 years ago Valerie Obenchain ★ 6.8k
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0
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3.1k
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Comment: C: converting transcripts to gene level
12.7 years ago Valerie Obenchain ★ 6.8k
0
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2
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1.4k
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Help With RNA-seq
Annotation Normalization Kidney edgeR baySeq Annotation Normalization Kidney edgeR baySeq
12.7 years ago Valerie Obenchain ★ 6.8k
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1
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1.4k
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Answer: A: Help With RNA-seq
12.7 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.3k
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[Rocky] - R code for PGSEA package to identify differentially expressed genes
GO affy limma GLAD PGSEA GSEABase GO affy limma GLAD PGSEA GSEABase
12.7 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.0k
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Comment: C: VariantAnnotation updated - error in predictCoding
12.7 years ago Valerie Obenchain ★ 6.8k
0
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1
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1.0k
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Answer: A: VariantAnnotation updated - error in predictCoding
12.7 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.4k
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Comment: C: Help With RNA-seq
12.7 years ago Valerie Obenchain ★ 6.8k
0
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0
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298
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Comment: C: [Rocky] - R code for PGSEA package to identify differentially expressed genes
12.7 years ago Valerie Obenchain ★ 6.8k
0
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1
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298
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Answer: A: [Rocky] - R code for PGSEA package to identify differentially expressed genes
12.7 years ago Valerie Obenchain ★ 6.8k
0
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1
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1.4k
views
Answer: A: Help With RNA-seq
12.7 years ago Valerie Obenchain ★ 6.8k
830 results • Page 15 of 17
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