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Comment: C: curious behavior from VariantAnnotation 1.5.36
11.6 years ago Valerie Obenchain ★ 6.8k
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1.9k
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Answer: A: find gene symbols immediately flanking before and after a SNP position
11.6 years ago Valerie Obenchain ★ 6.8k
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2.1k
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Answer: A: Extracting strand information from GenomicFeatures transcript db objects
11.6 years ago Valerie Obenchain ★ 6.8k
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921
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Answer: A: DataFrame bug?
11.6 years ago Valerie Obenchain ★ 6.8k
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1
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1.4k
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Comment: C: genome_intervals and GRange objects/HiTC package
11.6 years ago Valerie Obenchain ★ 6.8k
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2
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1.4k
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Answer: A: genome_intervals and GRange objects/HiTC package
11.6 years ago Valerie Obenchain ★ 6.8k
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0
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2.6k
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Comment: C: Getting Introns Expression at a Per Gene Level
11.7 years ago Valerie Obenchain ★ 6.8k
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1.1k
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Answer: A: graph::subGraph() problem with node attributes
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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2.6k
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Answer: A: Getting Introns Expression at a Per Gene Level
11.7 years ago Valerie Obenchain ★ 6.8k
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0
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1.2k
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Comment: C: transcriptDb object not found when call locateVariants() in a function
11.7 years ago Valerie Obenchain ★ 6.8k
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0
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1.0k
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Comment: C: VariantAnnotation: fine define Locating variants in and around genes
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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1.0k
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Answer: A: VariantAnnotation: fine define Locating variants in and around genes
11.7 years ago Valerie Obenchain ★ 6.8k
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0
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864
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Answer: A: Getting Introns Expression at a Per Gene Level
11.7 years ago Valerie Obenchain ★ 6.8k
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0
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701
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Answer: A: unpackVcf not found
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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930
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Answer: A: Error when splitting an AAStringSet
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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1.3k
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Comment: C: VariantAnnotation - MatrixToSnpMatrix - only returns NAs
11.7 years ago Valerie Obenchain ★ 6.8k
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1.4k
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Comment: C: VCF predictCoding(...) providing inconsistent results?
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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1.3k
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Answer: A: VariantAnnotation - MatrixToSnpMatrix - only returns NAs
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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1.4k
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Comment: C: VCF predictCoding(...) providing inconsistent results?
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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2.5k
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Answer: A: seqlevels in VCF objects
11.7 years ago Valerie Obenchain ★ 6.8k
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3
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2.8k
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Answer: A: merging VCF files
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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2.4k
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Comment: C: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
11.7 years ago Valerie Obenchain ★ 6.8k
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2
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2.4k
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Answer: A: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
11.7 years ago Valerie Obenchain ★ 6.8k
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0
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2.5k
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Answer: A: ComBat
11.7 years ago Valerie Obenchain ★ 6.8k
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786
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Answer: A: Empty Granges
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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2.5k
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Answer: A: ComBat
11.7 years ago Valerie Obenchain ★ 6.8k
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1
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3.0k
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Answer: A: flowCore: modifying exprs of a flowFrame
11.8 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Answer: A: scanVcf: FORMAT 'GT' not found
11.8 years ago Valerie Obenchain ★ 6.8k
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0
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2.3k
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Comment: C: locateVariants - error with GRanges query?
11.8 years ago Valerie Obenchain ★ 6.8k
0
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1
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642
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Why does a call to "unique" removes a DNAStringSet names?
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 6.8k
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0
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1.5k
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Answer: A: [VariantAnnotation] subsetting VCF objects
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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3.6k
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Comment: C: How to annotate genomic coordinates
11.9 years ago Valerie Obenchain ★ 6.8k
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1
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3.6k
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Comment: C: How to annotate genomic coordinates
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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3.6k
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Comment: C: How to annotate genomic coordinates
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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3.6k
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Comment: C: How to annotate genomic coordinates
11.9 years ago Valerie Obenchain ★ 6.8k
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1
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3.6k
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Comment: C: How to annotate genomic coordinates
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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1.5k
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Rle factors, table and empty levels
IRanges IRanges
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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1.0k
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Answer: A: A problem with getting promoter variants with the function locateVariants (from
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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945
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Comment: C: DNAStringSet_translate error in predictCoding()
11.9 years ago Valerie Obenchain ★ 6.8k
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1
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945
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Answer: A: DNAStringSet_translate error in predictCoding()
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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601
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Answer: A: Rle factors, table and empty levels
11.9 years ago Valerie Obenchain ★ 6.8k
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1
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1.5k
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Comment: C: Why is writeVcf() slow?
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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849
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Answer: A: GenomicRanges:::.filterMatchMatrix blows up nearest()
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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3.3k
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Comment: C: GenomicRanges::nearest (especially follow)
11.9 years ago Valerie Obenchain ★ 6.8k
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1
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1.5k
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Answer: A: Why is writeVcf() slow?
11.9 years ago Valerie Obenchain ★ 6.8k
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1
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3.3k
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Comment: C: GenomicRanges::nearest (especially follow)
11.9 years ago Valerie Obenchain ★ 6.8k
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0
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1.5k
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Answer: A: filterBam using rname
12.0 years ago Valerie Obenchain ★ 6.8k
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0
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3.3k
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Comment: C: GenomicRanges::nearest (especially follow)
12.0 years ago Valerie Obenchain ★ 6.8k
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2
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3.3k
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Comment: C: GenomicRanges::nearest (especially follow)
12.0 years ago Valerie Obenchain ★ 6.8k
0
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1
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3.3k
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Comment: C: GenomicRanges::nearest (especially follow)
12.0 years ago Valerie Obenchain ★ 6.8k
830 results • Page 13 of 17
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