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Comment: C: VariantAnnotation: Performance and memory issues in readVcf
11.4 years ago Valerie Obenchain ★ 6.8k
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Comment: C: VariantAnnotation: Performance and memory issues in readVcf
11.4 years ago Valerie Obenchain ★ 6.8k
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Answer: A: summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"
11.4 years ago Valerie Obenchain ★ 6.8k
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summarizeOverlaps mode ignoring inter feature overlaps
GenomicRanges Rsamtools GenomicRanges Rsamtools
updated 11.4 years ago by ★ 1.7k • written 11.4 years ago by ★ 6.8k
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Answer: A: VCF class: different length when unlisting INFO CompressedCharacterList
11.4 years ago Valerie Obenchain ★ 6.8k
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Comment: C: VariantAnnotation and distance to genes
11.4 years ago Valerie Obenchain ★ 6.8k
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Answer: A: GenomicRanges flank function with ignore.strand=TRUE
11.4 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Plugins in ensemblVEP
11.4 years ago Valerie Obenchain ★ 6.8k
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Comment: C: XML package - 500 internal server error
11.4 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Problem reading VCF file using readVcf from package VariantAnnotation
11.4 years ago Valerie Obenchain ★ 6.8k
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1.3k
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Answer: A: Using Precede in GenomicRanges
11.5 years ago Valerie Obenchain ★ 6.8k
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Answer: A: writeVcf bug
11.5 years ago Valerie Obenchain ★ 6.8k
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Subsetting vcf file by subject
VariantAnnotation Annotation cycle VariantAnnotation VariantAnnotation Annotation cycle
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: ensemblVEP: passing on coverage / frequency information
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: ensemblVEP: passing on coverage / frequency information
11.5 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Annotated a snp list to find where these snp are located.
11.5 years ago Valerie Obenchain ★ 6.8k
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Answer: A: ensemblVEP: passing on coverage / frequency information
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
11.5 years ago Valerie Obenchain ★ 6.8k
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3.0k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
11.5 years ago Valerie Obenchain ★ 6.8k
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3.0k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
11.5 years ago Valerie Obenchain ★ 6.8k
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1.2k
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Answer: A: Granges: range (gr) does not function
11.5 years ago Valerie Obenchain ★ 6.8k
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Answer: A: summarizeOverlaps mode ignoring inter feature overlaps
11.5 years ago Valerie Obenchain ★ 6.8k
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842
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Answer: A: expand() vcf with no info columns
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: definition for intergenic SNPs in locateVariants function
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: definition for intergenic SNPs in locateVariants function
11.5 years ago Valerie Obenchain ★ 6.8k
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1.3k
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Answer: A: definition for intergenic SNPs in locateVariants function
11.5 years ago Valerie Obenchain ★ 6.8k
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732
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Answer: A: exonsBy order
11.5 years ago Valerie Obenchain ★ 6.8k
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1.8k
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Comment: C: duplicate 'row.names' are not allowed from biocLite.R
11.5 years ago Valerie Obenchain ★ 6.8k
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977
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Answer: A: cummerBund - how to get splicing events
11.5 years ago Valerie Obenchain ★ 6.8k
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2.6k
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Comment: C: (no subject)
11.5 years ago Valerie Obenchain ★ 6.8k
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830
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Answer: A: Subsetting vcf file by subject
11.5 years ago Valerie Obenchain ★ 6.8k
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1.8k
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Comment: C: Calculate Outer Positions of GappedAlignmentPairs
11.5 years ago Valerie Obenchain ★ 6.8k
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998
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Answer: A: Error in .testGOFrame(x, organism)
11.5 years ago Valerie Obenchain ★ 6.8k
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Comment: C: yieldSize and paired end data in SummarizeOverlaps error?
11.5 years ago Valerie Obenchain ★ 6.8k
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2.3k
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Answer: A: yieldSize and paired end data in SummarizeOverlaps error?
11.6 years ago Valerie Obenchain ★ 6.8k
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1
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2.3k
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Answer: A: cummerbund how to get matrix for csheatmap
11.6 years ago Valerie Obenchain ★ 6.8k
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Comment: C: finding neigbouring intervals for 2 GRange objects
11.6 years ago Valerie Obenchain ★ 6.8k
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2.3k
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Answer: A: VariantAnnotation::readVcf is reordering the FORMAT field of my VCF file
11.6 years ago Valerie Obenchain ★ 6.8k
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Comment: C: finding neigbouring intervals for 2 GRange objects
11.6 years ago Valerie Obenchain ★ 6.8k
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1.2k
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Comment: C: flip strand of GappedAlignmentPairs Object
11.6 years ago Valerie Obenchain ★ 6.8k
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973
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Answer: A: ties & strandedness in distanceToNearest GRanges
11.6 years ago Valerie Obenchain ★ 6.8k
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1.2k
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Comment: C: flip strand of GappedAlignmentPairs Object
11.6 years ago Valerie Obenchain ★ 6.8k
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1.2k
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Answer: A: flip strand of GappedAlignmentPairs Object
11.6 years ago Valerie Obenchain ★ 6.8k
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4
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5.8k
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merging VCF files
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
written 11.7 years ago by ★ 6.8k
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5.8k
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Comment: C: merging VCF files
11.6 years ago Valerie Obenchain ★ 6.8k
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2.2k
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Answer: A: SNPassoc package data upload
11.6 years ago Valerie Obenchain ★ 6.8k
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465
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ExpressionSet Object
11.6 years ago Valerie Obenchain ★ 6.8k
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Comment: C: GENEID is missing when LOCATION is non-intergenic in VariantAnnotation package
11.6 years ago Valerie Obenchain ★ 6.8k
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1.6k
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Answer: A: GENEID is missing when LOCATION is non-intergenic in VariantAnnotation package
11.6 years ago Valerie Obenchain ★ 6.8k
830 results • Page 12 of 17
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