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Answer: A: ensemblVEP, variant_effect_predictor versions and release schedule
11.0 years ago Valerie Obenchain ★ 6.8k
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Comment: C: Fwd: summarizeOverlaps behavior on RNA-Seq paired end stranded data
11.0 years ago Valerie Obenchain ★ 6.8k
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2.7k
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Comment: C: need additional sanity checks in TabixFile or readVcf
11.0 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Answer: A: Fwd: summarizeOverlaps behavior on RNA-Seq paired end stranded data
11.0 years ago Valerie Obenchain ★ 6.8k
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1
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2.7k
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Comment: C: need additional sanity checks in TabixFile or readVcf
11.0 years ago Valerie Obenchain ★ 6.8k
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735
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VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
GenomicRanges GenomicRanges
11.0 years ago Valerie Obenchain ★ 6.8k
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Comment: C: zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
11.0 years ago Valerie Obenchain ★ 6.8k
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Comment: C: VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
11.0 years ago Valerie Obenchain ★ 6.8k
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1.3k
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Answer: A: VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
11.0 years ago Valerie Obenchain ★ 6.8k
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1
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1.5k
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Answer: A: zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
11.0 years ago Valerie Obenchain ★ 6.8k
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874
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Answer: A: GenomicRanges::findOverlap unexpected behaviour with 0 width ranges
11.0 years ago Valerie Obenchain ★ 6.8k
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0
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2.0k
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Comment: C: readGAlignmentPairs error
11.0 years ago Valerie Obenchain ★ 6.8k
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1
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2.0k
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Comment: C: readGAlignmentPairs error
11.0 years ago Valerie Obenchain ★ 6.8k
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1
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1.7k
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Answer: A: replace nucleotide at fixed position in a DNAStringSet object
11.0 years ago Valerie Obenchain ★ 6.8k
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0
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737
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Comment: C: Getting Introns Expression at a Per Gene Level
11.1 years ago Valerie Obenchain ★ 6.8k
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1
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737
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Answer: A: Getting Introns Expression at a Per Gene Level
11.1 years ago Valerie Obenchain ★ 6.8k
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1.5k
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Answer: A: topGO analysis returns different gene counts for category than given for non-mod
11.1 years ago Valerie Obenchain ★ 6.8k
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0
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996
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Comment: C: matchTable for pairwiseAlignment in Biostrings?
11.1 years ago Valerie Obenchain ★ 6.8k
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1.7k
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Comment: C: Finding my un-counted reads
11.1 years ago Valerie Obenchain ★ 6.8k
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2
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1.7k
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Answer: A: Finding my un-counted reads
11.1 years ago Valerie Obenchain ★ 6.8k
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0
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1.7k
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Answer: A: findOverlaps() fails with type = 'equal' fails when query is a CollapsedVCF obje
11.1 years ago Valerie Obenchain ★ 6.8k
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0
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2.3k
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Answer: A: Semantics of GenomicRanges gaps()
11.1 years ago Valerie Obenchain ★ 6.8k
0
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1
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996
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Answer: A: matchTable for pairwiseAlignment in Biostrings?
11.1 years ago Valerie Obenchain ★ 6.8k
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1
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13k
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Comment: C: [GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
11.1 years ago Valerie Obenchain ★ 6.8k
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Answer: A: [GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
11.1 years ago Valerie Obenchain ★ 6.8k
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3.8k
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Answer: A: saving GRanges objects - resulting file size issue
11.1 years ago Valerie Obenchain ★ 6.8k
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0
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3.8k
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Answer: A: saving GRanges objects - resulting file size issue
11.1 years ago Valerie Obenchain ★ 6.8k
0
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1
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3.5k
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Comment: C: RNASeq:- getting Zero Count
11.1 years ago Valerie Obenchain ★ 6.8k
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1
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3.5k
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Comment: C: RNASeq:- getting Zero Count
11.2 years ago Valerie Obenchain ★ 6.8k
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1
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3.5k
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Answer: A: RNASeq:- getting Zero Count
11.2 years ago Valerie Obenchain ★ 6.8k
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1.7k
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Comment: C: Error in locateVariants
11.2 years ago Valerie Obenchain ★ 6.8k
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1.7k
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Answer: A: Error in locateVariants
11.2 years ago Valerie Obenchain ★ 6.8k
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0
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922
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Answer: A: How to transform a fastq object in granges?
11.2 years ago Valerie Obenchain ★ 6.8k
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1
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2.4k
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Comment: C: Filtering BAM files by start position for VariantTools
11.2 years ago Valerie Obenchain ★ 6.8k
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1
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2.4k
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Comment: C: Filtering BAM files by start position for VariantTools
11.2 years ago Valerie Obenchain ★ 6.8k
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0
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2.4k
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Comment: C: Filtering BAM files by start position for VariantTools
11.2 years ago Valerie Obenchain ★ 6.8k
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2
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2.4k
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Answer: A: Filtering BAM files by start position for VariantTools
11.2 years ago Valerie Obenchain ★ 6.8k
0
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1
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1.9k
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Answer: A: summarizeOverlaps with mapq filter?
11.2 years ago Valerie Obenchain ★ 6.8k
0
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2
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916
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using a gtf file to map reads
GO GenomicFeatures DEXSeq GO GenomicFeatures DEXSeq
updated 11.3 years ago by ★ 1.9k • written 11.3 years ago by ★ 6.8k
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951
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Answer: A: PREDA command does not work
11.3 years ago Valerie Obenchain ★ 6.8k
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512
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summarizeOverlaps: ambiguous method dispatch
GO GO
11.3 years ago Valerie Obenchain ★ 6.8k
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3.4k
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Comment: C: SNP annotation in R
11.3 years ago Valerie Obenchain ★ 6.8k
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3.4k
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Comment: C: SNP annotation in R
11.3 years ago Valerie Obenchain ★ 6.8k
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2.3k
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Comment: C: using a gtf file to map reads
11.3 years ago Valerie Obenchain ★ 6.8k
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1
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2.3k
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Comment: C: using a gtf file to map reads
11.3 years ago Valerie Obenchain ★ 6.8k
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251
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Answer: A: Plugins in ensemblVEP
11.3 years ago Valerie Obenchain ★ 6.8k
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1.9k
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Comment: C: multiple feature/mode counting with summarizeOverlaps
11.4 years ago Valerie Obenchain ★ 6.8k
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1.9k
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Answer: A: multiple feature/mode counting with summarizeOverlaps
11.4 years ago Valerie Obenchain ★ 6.8k
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0
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1.1k
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[devteam-bioc] sort error in GRange
rtracklayer GenomicRanges rtracklayer GenomicRanges
11.4 years ago Valerie Obenchain ★ 6.8k
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813
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Answer: A: summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"
11.4 years ago Valerie Obenchain ★ 6.8k
830 results • Page 11 of 17
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