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0
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1
reply
1.3k
views
Comment:
C: GenomicAlignments and QNAME collision
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.3k
views
Answer:
A: GenomicAlignments and QNAME collision
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.9k
views
Answer:
A: GenomicRanges seqlengths problem
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.2k
views
Comment:
C: countOverlaps Warnings
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.2k
views
Comment:
C: countOverlaps Warnings
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.2k
views
Comment:
C: countOverlaps Warnings
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.2k
views
Comment:
C: countOverlaps Warnings
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
770
views
Answer:
A: summarizeOverlaps: number of dropped reads
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.2k
views
Answer:
A: countOverlaps Warnings
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.8k
views
Comment:
C: summarizeOverlaps using GRanges or bed file as reads?
10.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.8k
views
Answer:
A: A question about the function readGAlignmentPairs in GenomicRnages package
10.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
738
views
Bioconductor newsletter: April 2014
Cancer
Cancer
updated 10.5 years ago by
Malcolm Cook
★ 1.6k • written 10.5 years ago by
Valerie Obenchain
★ 6.8k
0
votes
0
replies
738
views
Comment:
C: Bioconductor newsletter: April 2014
10.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.1k
views
Answer:
A: readGAlignmentPairsFromBam and readGAlignmentFromBam differences
10.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.1k
views
Comment:
C: variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
10.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.1k
views
Comment:
C: variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
10.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.1k
views
Comment:
C: variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
2.1k
views
Comment:
C: variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
10.7 years ago
Valerie Obenchain
★ 6.8k
1
vote
1
reply
6.1k
views
Answer:
A: get promoter regions (bed format) of genes hg19
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
833
views
Comment:
C: makeGappedAlignmentPairs for broken pairs
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
833
views
Answer:
A: makeGappedAlignmentPairs for broken pairs
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.6k
views
Comment:
C: AllelicImbalance with VCFs?
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.6k
views
Comment:
C: AllelicImbalance with VCFs?
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.6k
views
Answer:
A: retrieving LD between two known SNPs with rsID
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.3k
views
Comment:
C: ensemblVEP, variant_effect_predictor versions and release schedule
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.3k
views
Answer:
A: ensemblVEP, variant_effect_predictor versions and release schedule
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.7k
views
Answer:
A: VCF as custom variant annotation database
10.7 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
3.0k
views
Comment:
C: Problems Counting Reads with summarizeOverlaps
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.0k
views
Comment:
C: Problems Counting Reads with summarizeOverlaps
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
953
views
Answer:
A: Bug in subsetting vcf file by subject on more than 5 samples
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.2k
views
Comment:
C: Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.1k
views
Comment:
C: Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.2k
views
Answer:
A: Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.0k
views
Comment:
C: Problems Counting Reads with summarizeOverlaps
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.0k
views
Comment:
C: Problems Counting Reads with summarizeOverlaps
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.0k
views
Answer:
A: Problems Counting Reads with summarizeOverlaps
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.2k
views
Answer:
A: Using Biostring to make position frequency matrix
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.4k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.1k
views
readVcf fails when ALT field contains breakends and no symbolic allele
VariantAnnotation
VariantAnnotation
VariantAnnotation
VariantAnnotation
updated 10.9 years ago by
Daniel Cameron
▴ 40 • written 10.9 years ago by
Valerie Obenchain
★ 6.8k
0
votes
1
reply
889
views
stranded intronic variants with VariantAnnotation::locateVariants()
Annotation
Annotation
updated 10.9 years ago by
Robert Castelo
★ 3.4k • written 10.9 years ago by
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.1k
views
Comment:
C: readVcf fails when ALT field contains breakends and no symbolic allele
10.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.1k
views
Answer:
A: stranded intronic variants with VariantAnnotation::locateVariants()
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.4k
views
Comment:
C: ensemblVEP, variant_effect_predictor versions and release schedule
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.4k
views
Comment:
C: ensemblVEP, variant_effect_predictor versions and release schedule
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.9k
views
Comment:
C: GRangesList mcols names
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.9k
views
Comment:
C: GRangesList mcols names
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
3.9k
views
Answer:
A: GRangesList mcols names
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
4.8k
views
Answer:
A: Summarized Experiments - Combine
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.9k
views
Comment:
C: Fwd: summarizeOverlaps behavior on RNA-Seq paired end stranded data
11.0 years ago
Valerie Obenchain
★ 6.8k
830 results • Page
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