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Answer: A: edgeR: very low p-value and very high variance within the group of replicates
11.3 years ago Simon Anders ★ 3.8k
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Answer: A: p-value vs adjusted p-value in DEXSeq
11.3 years ago Simon Anders ★ 3.8k
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Comment: C: What is a good "control" for bacteria RNA-seq samples from a series of time poin
11.3 years ago Simon Anders ★ 3.8k
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Answer: A: do we need remove PCR duplicate before we look for DE genes
11.3 years ago Simon Anders ★ 3.8k
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Comment: C: interaction effects for DEXSeq
11.3 years ago Simon Anders ★ 3.8k
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Answer: A: interaction effects for DEXSeq
11.3 years ago Simon Anders ★ 3.8k
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Comment: C: Question if DESeq can still be used after correction for T0?
11.3 years ago Simon Anders ★ 3.8k
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917
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Comment: C: Question if DESeq can still be used after correction for T0?
11.3 years ago Simon Anders ★ 3.8k
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Answer: A: DESEQ ANODEV : A time course study
11.3 years ago Simon Anders ★ 3.8k
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2.3k
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Comment: C: using a gtf file to map reads
11.3 years ago Simon Anders ★ 3.8k
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Comment: C: [DESeq] p-value vs adjusted p-value
11.3 years ago Simon Anders ★ 3.8k
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Answer: A: a question in merging sam files for DEXSeq
11.3 years ago Simon Anders ★ 3.8k
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2.5k
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Comment: C: DESeq /edgeR design problem for a small RNASeq
11.3 years ago Simon Anders ★ 3.8k
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2.5k
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Comment: C: DESeq /edgeR design problem for a small RNASeq
11.3 years ago Simon Anders ★ 3.8k
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2.5k
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Comment: C: DESeq /edgeR design problem for a small RNASeq
11.3 years ago Simon Anders ★ 3.8k
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2.5k
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Answer: A: DESeq /edgeR design problem for a small RNASeq
11.3 years ago Simon Anders ★ 3.8k
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Answer: A: DESeq normalisation strategy
11.3 years ago Simon Anders ★ 3.8k
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1.8k
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Answer: A: DEXSeq Problems
11.3 years ago Simon Anders ★ 3.8k
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2.4k
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Answer: A: DESeq no recognizing row.names
11.4 years ago Simon Anders ★ 3.8k
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2.9k
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Answer: A: DEXSeq error: Count files do not correspond to the flattened annotation file
11.4 years ago Simon Anders ★ 3.8k
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2.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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1.5k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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0
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1.5k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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1
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1.5k
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Answer: A: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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2.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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1
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2.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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1
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2.9k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.4 years ago Simon Anders ★ 3.8k
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3.0k
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Comment: C: heatmap with variance stabilizing transformed expression data in DESeq
11.4 years ago Simon Anders ★ 3.8k
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3.0k
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Comment: C: Analyzing technical replicates with DESeq2
11.4 years ago Simon Anders ★ 3.8k
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641
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Answer: A: FW: DESeq Design (val1 vs mean (val2, val3, val4))
11.4 years ago Simon Anders ★ 3.8k
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Comment: C: DESeq versus CuffDiff2 for RNA-seq expression quantification in parasite-infecte
11.4 years ago Simon Anders ★ 3.8k
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3.6k
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Answer: A: DESeq versus CuffDiff2 for RNA-seq expression quantification in parasite-infecte
11.4 years ago Simon Anders ★ 3.8k
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Answer: A: DESeq2 vs limma/voom: PCA completely different. How to proceed?
11.4 years ago Simon Anders ★ 3.8k
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Answer: A: DESeq estimateDispersions
11.5 years ago Simon Anders ★ 3.8k
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Answer: A: Multifactor analysis with deseq
11.5 years ago Simon Anders ★ 3.8k
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2.2k
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Comment: C: Multifactor analysis with deseq
11.5 years ago Simon Anders ★ 3.8k
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2.2k
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Answer: A: Multifactor analysis with deseq
11.5 years ago Simon Anders ★ 3.8k
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Comment: C: Testing for no change in RNA-seq data?
11.5 years ago Simon Anders ★ 3.8k
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Answer: A: Testing for no change in RNA-seq data?
11.5 years ago Simon Anders ★ 3.8k
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Answer: A: Applying DESeq on RSEM output
11.5 years ago Simon Anders ★ 3.8k
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1.9k
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Comment: C: edgeR for data combined from different studies and/or platforms
11.5 years ago Simon Anders ★ 3.8k
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2.2k
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Answer: A: how to get the exon count by using htseq-count
11.5 years ago Simon Anders ★ 3.8k
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1.9k
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Comment: C: edgeR for data combined from different studies and/or platforms
11.5 years ago Simon Anders ★ 3.8k
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Answer: A: DESeq pairwise comparisons between conditions within a multi-factor design
11.5 years ago Simon Anders ★ 3.8k
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1.6k
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Answer: A: Difference between EdgeR and DeSeq in library normalization
11.5 years ago Simon Anders ★ 3.8k
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2.6k
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Comment: C: (no subject)
11.5 years ago Simon Anders ★ 3.8k
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2.6k
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Answer: A: (no subject)
11.6 years ago Simon Anders ★ 3.8k
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16k
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Answer: A: DESeq - plotPCA
11.6 years ago Simon Anders ★ 3.8k
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Answer: A: DEXSeq dexseq_prepare_annotation.py error
11.6 years ago Simon Anders ★ 3.8k
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1.8k
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Answer: A: EBImage: putting two images next to each others
11.6 years ago Simon Anders ★ 3.8k
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