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Answer: A: assignChromosomeRegion in 2.6.0 ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
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Comment: C: ChIPpeakAnno "examplePattern.fa" file
11.6 years ago Julie Zhu ★ 4.3k
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Answer: A: ChIPpeakAnno "examplePattern.fa" file
11.6 years ago Julie Zhu ★ 4.3k
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Answer: A: Finding closest gene to chromosomal position (non-human or mouse)
11.6 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
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Comment: C: ChIPpeakAnno question--peak aggregation over bins from TSS
11.7 years ago Julie Zhu ★ 4.3k
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Answer: A: ChIPpeakAnno question--peak aggregation over bins from TSS
11.7 years ago Julie Zhu ★ 4.3k
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Answer: A: ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25,
11.7 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25, genome=Mmusculus)
11.7 years ago Julie Zhu ★ 4.3k
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Comment: C: ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25,
11.7 years ago Julie Zhu ★ 4.3k
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2.3k
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Answer: A: ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25,
11.7 years ago Julie Zhu ★ 4.3k
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Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
11.8 years ago Julie Zhu ★ 4.3k
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Answer: A: Use ChIPpeakAnno to find two-sided nearest genes to a peak
11.8 years ago Julie Zhu ★ 4.3k
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Answer: A: Use ChIPpeakAnno to find two-sided nearest genes to a peak
11.8 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno
Annotation Category ChIPpeakAnno Annotation Category ChIPpeakAnno
11.9 years ago Julie Zhu ★ 4.3k
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629
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GeneNetworkBuilder package
Network Network
12.0 years ago Julie Zhu ★ 4.3k
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1.3k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics GO ChIPpeakAnno Genetics GO ChIPpeakAnno
12.0 years ago Julie Zhu ★ 4.3k
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Comment: C: Fetch scaffold sequences from BSgenome package
12.1 years ago Julie Zhu ★ 4.3k
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findOverlappingPeaks in ChipPeakAnno
annotate annotate
12.1 years ago Julie Zhu ★ 4.3k
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Comment: C: Set plot title in makeVennDiagram (ChIPpeakAnno)
12.1 years ago Julie Zhu ★ 4.3k
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Fetch scaffold sequences from BSgenome package
BSgenome BSgenome BSgenome BSgenome
updated 12.1 years ago by 16k • written 12.1 years ago by ★ 4.3k
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Comment: C: Set plot title in makeVennDiagram (ChIPpeakAnno)
12.1 years ago Julie Zhu ★ 4.3k
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Comment: C: Set plot title in makeVennDiagram (ChIPpeakAnno)
12.1 years ago Julie Zhu ★ 4.3k
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1.5k
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Answer: A: Set plot title in makeVennDiagram (ChIPpeakAnno)
12.1 years ago Julie Zhu ★ 4.3k
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question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno - keep fold enrichment information
12.1 years ago Julie Zhu ★ 4.3k
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Answer: A: RE ChIPPEAKANNO
12.1 years ago Julie Zhu ★ 4.3k
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RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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Answer: A: ChipPeakAnno / GRanges isolate peaks that do NOT overlap
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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ChIPpeakAnno
convert ChIPpeakAnno convert ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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Answer: A: ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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Answer: A: RE ChIPPEAKANNO
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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Answer: A: ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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ChIPpeakAnno - getAnnotation
Alignment Annotation Alignment Annotation
12.1 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno - c elegans annotation feature type: translation start site
Transcription Transcription
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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Answer: A: ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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1.3k
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Answer: A: ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
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2.0k
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Comment: C: ChipPeakAnno: 4-way venn diagram
12.2 years ago Julie Zhu ★ 4.3k
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2.0k
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Comment: C: ChipPeakAnno: 4-way venn diagram
12.2 years ago Julie Zhu ★ 4.3k
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2.0k
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Comment: C: ChipPeakAnno: 4-way venn diagram
12.2 years ago Julie Zhu ★ 4.3k
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2.0k
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Answer: A: ChipPeakAnno: 4-way venn diagram
12.2 years ago Julie Zhu ★ 4.3k
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1.2k
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Answer: A: Question about ChIPpeakAnno R package
12.2 years ago Julie Zhu ★ 4.3k
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1
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1.2k
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.2 years ago Julie Zhu ★ 4.3k
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1.0k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
12.2 years ago Julie Zhu ★ 4.3k
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620
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ChippeakAnno
updated 12.2 years ago by ▴ 10 • written 12.2 years ago by ★ 4.3k
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1.4k
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Answer: A: more question about makeVennDiagram
12.2 years ago Julie Zhu ★ 4.3k
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4
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1.4k
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more question about makeVennDiagram
GO ChIPpeakAnno GO ChIPpeakAnno
12.2 years ago Julie Zhu ★ 4.3k
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1.4k
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Comment: C: more question about makeVennDiagram
12.2 years ago Julie Zhu ★ 4.3k
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1
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1.9k
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Answer: A: ChIPpeakAnno to find peaks nearest to miRNA
12.2 years ago Julie Zhu ★ 4.3k
660 results • Page 9 of 14
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