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Answer: A: Fastest way to get the distances between pairs of graph nodes
8.1 years ago Wolfgang Huber ★ 13k
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Comment: C: Weighted matrix from igraph to graphNEL
8.1 years ago Wolfgang Huber ★ 13k
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Comment: C: How to avoid repeated overlap pair for GRanges object in grid?
8.1 years ago Wolfgang Huber ★ 13k
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Answer: A: Bioconductor packages for machine learning with RNAseq
8.1 years ago Wolfgang Huber ★ 13k
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Answer: A: how install the package EBIamge on the software R 3.3.1?
8.2 years ago Wolfgang Huber ★ 13k
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Answer: A: Transforming Variance Stabilised Counts to Relative Abundances
8.2 years ago Wolfgang Huber ★ 13k
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Comment: C: How to deal with these data with DESeq2 ?? In hurry!
8.2 years ago Wolfgang Huber ★ 13k
4
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2.1k
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Answer: A: Processing imaging data from high throughput compound screen with EBImage
8.2 years ago Wolfgang Huber ★ 13k
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1.3k
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Answer: A: array Quality Metrics
8.3 years ago Wolfgang Huber ★ 13k
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1.6k
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Comment: C: Reading CEL files
8.3 years ago Wolfgang Huber ★ 13k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
8.3 years ago Wolfgang Huber ★ 13k
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1.7k
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Comment: C: Error to convert a DGEList to DESeqDataSet in DEFormats
8.3 years ago Wolfgang Huber ★ 13k
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3.7k
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Answer: A: Variance stabilizing transformation seems not working on NGS (bacterial 16srRNA
8.4 years ago Wolfgang Huber ★ 13k
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5.2k
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Comment: C: [DESEQ2] VST with rlog + normalization (size factor estimation) for downstream (
8.4 years ago Wolfgang Huber ★ 13k
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563
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Answer: A: DESEq gives adjusted pvalue as 1 for all regions
8.4 years ago Wolfgang Huber ★ 13k
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5.9k
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Answer: A: adding margins around pheatmap plots
8.4 years ago Wolfgang Huber ★ 13k
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Comment: C: Appeal to DESeq2 authors: please keep results reproducible across version
8.4 years ago Wolfgang Huber ★ 13k
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1.8k
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Comment: C: DESeq2 interacting with agricolae
8.4 years ago Wolfgang Huber ★ 13k
2
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1.8k
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Answer: A: DESeq2 interacting with agricolae
8.4 years ago Wolfgang Huber ★ 13k
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4.2k
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Answer: A: arrayQualityMetrics does not complete successfully
8.4 years ago Wolfgang Huber ★ 13k
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Comment: C: Variance estimation with DESeq2 and rLog transformation.
8.4 years ago Wolfgang Huber ★ 13k
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1.5k
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Answer: A: Variance estimation with DESeq2 and rLog transformation.
8.4 years ago Wolfgang Huber ★ 13k
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1.4k
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Answer: A: Assesment of the number of signatures when using SomaticSignatures package
8.4 years ago Wolfgang Huber ★ 13k
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Job: Two Postdoc Positions in Evolutionary Single-Cell Genomics (experimental and computational)
evolution single-cell development differentiation cool Job
8.5 years ago Wolfgang Huber ★ 13k
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1.2k
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Answer: A: More control parameters expected in lpsymphony?
8.5 years ago Wolfgang Huber ★ 13k
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Answer: A: Why are these two clustering patterns different?
8.6 years ago Wolfgang Huber ★ 13k
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Comment: C: Run DESeq with only a handful of genes
8.6 years ago Wolfgang Huber ★ 13k
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News: Workshop: Clinical Bioinformatics as a Service, at ECCB 2016 - register till 29 May
workshop News
8.7 years ago • updated 8.6 years ago Wolfgang Huber ★ 13k
2
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3.3k
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Answer: A: How is the mean-variance plot calculated?
8.6 years ago Wolfgang Huber ★ 13k
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2.7k
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Answer: A: DESeq normalization seems to reverse the directionality of log2FoldChange - is t
8.6 years ago Wolfgang Huber ★ 13k
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1.7k
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Answer: A: DEXSeq and shrinkage diagnostic : Comparison between results in plotDispEsts( dx
8.6 years ago Wolfgang Huber ★ 13k
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1.4k
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Answer: A: interpreting dispersion estimation in dexseq
8.6 years ago Wolfgang Huber ★ 13k
1
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1.3k
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Job: Industry Postdoc at EMBL: Statistical Computing in Multi-Omics and Drug Target Validation
job Job
8.7 years ago Wolfgang Huber ★ 13k
5
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3.6k
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News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 8.7 years ago by ▴ 10 • written 8.7 years ago by ★ 13k
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Answer: A: PlotMA Filters for DeSEQ2 ; adjusting script
8.7 years ago Wolfgang Huber ★ 13k
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2.7k
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Answer: A: making ExpressionSet from RGList via NChannelSet for use with 'sva'
8.8 years ago Wolfgang Huber ★ 13k
0
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1.6k
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Answer: A: DESeq's estimateDispersions does not work
8.8 years ago Wolfgang Huber ★ 13k
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1.9k
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Answer: A: SomaticSignatures: Interpretation of plotSamples graphs
8.8 years ago Wolfgang Huber ★ 13k
2
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1
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2.2k
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Answer: A: Problem when installing DESeq on MAC OS X
8.8 years ago Wolfgang Huber ★ 13k
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1.3k
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Answer: A: code in supplementary 2 of DESeq
8.8 years ago Wolfgang Huber ★ 13k
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13k
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Answer: A: DESeq2 FPKM normalization
8.9 years ago Wolfgang Huber ★ 13k
0
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3.4k
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Answer: A: DESeq2 filter out my expression gene
8.9 years ago Wolfgang Huber ★ 13k
0
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1.6k
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Job: Computational Scientist for EMBL Proteomics Core Facility
Exciting bioinformatician job Job
8.9 years ago Wolfgang Huber ★ 13k
0
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3.5k
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Answer: A: Cook´s distance on DESeq2
8.9 years ago Wolfgang Huber ★ 13k
0
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1.6k
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Answer: A: Error with DEXSeqDataSet object after performing pre-filter
8.9 years ago Wolfgang Huber ★ 13k
1
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2.3k
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Answer: A: Large differences in sample clustering using cummeRbund (csDendro) and rlog-dist
8.9 years ago Wolfgang Huber ★ 13k
2
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Answer: A: edger and deseq2 log2FC nornalization
8.9 years ago Wolfgang Huber ★ 13k
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1
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7.5k
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Comment: C: DESeq2 multiple interaction terms 3-factor design
8.9 years ago Wolfgang Huber ★ 13k
1
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1
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2.5k
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Answer: A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
9.0 years ago Wolfgang Huber ★ 13k
3
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1
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11k
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Answer: A: Deseq2 error estimating size factors -- zeros in count matrix
updated 9.0 years ago by 43k • written 9.0 years ago by ★ 13k
1,430 results • Page 4 of 29
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