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Comment: C: Limma, SAM and Fold Change Calculation
updated 7.5 years ago by 51k • written 17.2 years ago by ▴ 900
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2
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7.4k
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Comment: C: Limma, SAM and Fold Change Calculation
updated 7.5 years ago by 51k • written 17.2 years ago by ▴ 900
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0
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2.4k
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Answer: C: lmFit only deals with numerical values (data matrix object)?
updated 9.8 years ago by 51k • written 13.5 years ago by ▴ 900
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0
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2.3k
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Comment: C: Linkage Disequilibrium Analysis
12.3 years ago Holger Schwender ▴ 900
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0
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1.6k
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Comment: C: Siggenes SAM analysis: log2 transformation and Understanding output
12.6 years ago Holger Schwender ▴ 900
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0
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1.3k
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Answer: A: siggenes parameters
13.3 years ago Holger Schwender ▴ 900
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0
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1.1k
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Answer: A: RMA (affy) followed by SAM (samr)
13.4 years ago Holger Schwender ▴ 900
0
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0
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1.4k
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Answer: A: siggenes sam2excel Error
13.5 years ago Holger Schwender ▴ 900
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1
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1.4k
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Answer: A: siggenes sam2excel Error
13.5 years ago Holger Schwender ▴ 900
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1
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1.3k
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Answer: A: prepare data matrix for siggenes
13.5 years ago Holger Schwender ▴ 900
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0
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1.1k
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Answer: A: SAM results
13.9 years ago Holger Schwender ▴ 900
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0
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949
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Answer: A: selection of dif.exp.genes defining FDR in SAM
14.3 years ago Holger Schwender ▴ 900
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0
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1.9k
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Answer: A: Interpreting the delta table from SAM
14.3 years ago Holger Schwender ▴ 900
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0
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1.4k
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Answer: A: Changes in siggenes?
14.8 years ago Holger Schwender ▴ 900
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0
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1.3k
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Comment: C: Patent issues of classification algorithms
14.8 years ago Holger Schwender ▴ 900
0
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0
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1.2k
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Answer: A: R: Minor problem with siggenes's command sam2excel when entrez=TRUE
15.2 years ago Holger Schwender ▴ 900
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0
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1.1k
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Answer: A: Minor problem with siggenes's command sam2excel when entrez=TRUE
15.2 years ago Holger Schwender ▴ 900
0
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0
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652
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Error message when working with sam
Annotation Annotation
15.2 years ago Holger Schwender ▴ 900
0
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0
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907
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Comment: C: P-values returned from siggenes's sam() function
15.4 years ago Holger Schwender ▴ 900
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2
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907
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P-values returned from siggenes's sam() function
updated 15.4 years ago by ▴ 320 • written 15.4 years ago by ▴ 900
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0
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795
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Comment: C: Error message when working with sam
15.5 years ago Holger Schwender ▴ 900
0
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0
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785
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Answer: A: Filtering SAM results
15.5 years ago Holger Schwender ▴ 900
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0
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1.1k
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Answer: A: SNP analysis
15.7 years ago Holger Schwender ▴ 900
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1
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3.6k
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Comment: C: Heatmap problem
15.7 years ago Holger Schwender ▴ 900
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0
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1.2k
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Comment: C: Limma without eBayes correction
15.7 years ago Holger Schwender ▴ 900
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0
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1.3k
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Comment: C: Siggenes/SAM Error
16.3 years ago Holger Schwender ▴ 900
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1
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1.3k
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Comment: C: Siggenes/SAM Error
16.3 years ago Holger Schwender ▴ 900
0
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1
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1.3k
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Answer: A: Siggenes/SAM Error
16.3 years ago Holger Schwender ▴ 900
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0
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1.2k
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Comment: C: more samr woes
16.4 years ago Holger Schwender ▴ 900
0
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0
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2.5k
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Comment: C: SAM analysis : samr package vs siggenes package
16.5 years ago Holger Schwender ▴ 900
0
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1
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2.5k
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Answer: A: SAM analysis : samr package vs siggenes package
16.5 years ago Holger Schwender ▴ 900
0
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0
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1.8k
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Comment: C: SAM siggenes number of permutations
16.7 years ago Holger Schwender ▴ 900
0
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0
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1.8k
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Comment: C: SAM siggenes number of permutations
16.7 years ago Holger Schwender ▴ 900
0
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0
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1.8k
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Comment: C: SAM siggenes number of permutations
16.7 years ago Holger Schwender ▴ 900
0
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1
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1.8k
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Comment: C: SAM siggenes number of permutations
16.7 years ago Holger Schwender ▴ 900
0
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0
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1.2k
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Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
16.8 years ago Holger Schwender ▴ 900
0
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1
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752
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Answer: A: siggenes fc threshold
16.8 years ago Holger Schwender ▴ 900
0
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0
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515
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Answer: A: Question on SAM output
16.9 years ago Holger Schwender ▴ 900
0
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0
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404
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Answer: A: Problem of using MultiClass SAM (siggenes package)
16.9 years ago Holger Schwender ▴ 900
0
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0
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1.2k
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Comment: C: design matrix
17.0 years ago Holger Schwender ▴ 900
0
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0
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834
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Answer: A: SAM vs. sam2.20
17.1 years ago Holger Schwender ▴ 900
0
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0
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800
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Getting associated genes from SNP anntotation files
SNP oligo SNP oligo
17.1 years ago Holger Schwender ▴ 900
0
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0
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429
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Answer: A: retrieving specific FDR value from SAM
17.2 years ago Holger Schwender ▴ 900
0
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1
reply
1.1k
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Comment: C: sam and the new version
17.2 years ago Holger Schwender ▴ 900
0
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1
reply
1.1k
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Comment: C: sam and the new version
17.2 years ago Holger Schwender ▴ 900
0
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2
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1.1k
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Answer: A: sam and the new version
17.2 years ago Holger Schwender ▴ 900
0
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0
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1.8k
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Comment: C: how to see the content of a R function in a package?
17.3 years ago Holger Schwender ▴ 900
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0
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497
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Comment: C: siggenes 1.10 na.handling
17.4 years ago Holger Schwender ▴ 900
0
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0
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977
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Answer: A: problem with list.siggenes in siggenes package
17.4 years ago Holger Schwender ▴ 900
0
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0
replies
492
views
Answer: A: siggenes
17.7 years ago Holger Schwender ▴ 900
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