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Comment: C: Where to get BAM files for easyRNASeq human use case
12.7 years ago delhomme@embl.de ★ 1.2k
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2.2k
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Comment: C: Where to get BAM files for easyRNASeq human use case
12.7 years ago delhomme@embl.de ★ 1.2k
0
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1
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2.2k
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Answer: A: Where to get BAM files for easyRNASeq human use case
12.7 years ago delhomme@embl.de ★ 1.2k
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0
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1.4k
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Answer: A: Warnings with running easyRNASeq with easyRNASeq tutorial
12.7 years ago delhomme@embl.de ★ 1.2k
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2.7k
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Answer: A: EasyRNASeq issue (missing bai files)
12.8 years ago delhomme@embl.de ★ 1.2k
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2.7k
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Answer: A: EasyRNASeq issue (missing bai files)
12.8 years ago delhomme@embl.de ★ 1.2k
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2.7k
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Answer: A: EasyRNASeq issue (missing bai files)
12.8 years ago delhomme@embl.de ★ 1.2k
0
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0
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2.7k
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Answer: A: EasyRNASeq issue (missing bai files)
12.8 years ago delhomme@embl.de ★ 1.2k
0
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5
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2.7k
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EasyRNASeq issue (missing bai files)
GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq
updated 12.8 years ago by ▴ 10 • written 12.8 years ago by ★ 1.2k
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Comment: C: IRanges coverage integer limit?
12.8 years ago delhomme@embl.de ★ 1.2k
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1
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1.8k
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Comment: C: IRanges coverage integer limit?
12.8 years ago delhomme@embl.de ★ 1.2k
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Comment: C: IRanges problem: findOverlaps
12.8 years ago delhomme@embl.de ★ 1.2k
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1.0k
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reads of different lengths (easyRNASeq)
Annotation Organism BSgenome convert BSgenome easyRNASeq Annotation Organism BSgenome
12.8 years ago delhomme@embl.de ★ 1.2k
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1
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1.8k
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Comment: C: IRanges coverage integer limit?
12.8 years ago delhomme@embl.de ★ 1.2k
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6
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1.8k
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IRanges coverage integer limit?
Coverage IRanges Coverage IRanges
updated 12.8 years ago by 16k • written 12.8 years ago by ★ 1.2k
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1
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968
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IRanges: the width argument of the coverage function
Coverage Coverage
updated 12.8 years ago by 16k • written 12.8 years ago by ★ 1.2k
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1
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949
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Comment: C: Getting the length of every element from a large CompressedIRangesList is slow
12.8 years ago delhomme@embl.de ★ 1.2k
0
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1
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949
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Answer: A: Getting the length of every element from a large CompressedIRangesList is slow
12.8 years ago delhomme@embl.de ★ 1.2k
0
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4
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949
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Getting the length of every element from a large CompressedIRangesList is slow
IRanges IRanges
12.8 years ago delhomme@embl.de ★ 1.2k
0
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1
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2.3k
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Comment: C: DESeq estimateDispersions() problem
12.9 years ago delhomme@embl.de ★ 1.2k
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3
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2.3k
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DESeq estimateDispersions() problem
DESeq DESeq
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 1.2k
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1.3k
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Comment: C: easyRNAseq question
12.9 years ago delhomme@embl.de ★ 1.2k
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4
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1.3k
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easyRNAseq question
easyRNASeq easyRNASeq
updated 12.9 years ago by ▴ 190 • written 12.9 years ago by ★ 1.2k
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1
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1.4k
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Answer: A: easyRNASeq Error in counting from C.elegans
12.9 years ago delhomme@embl.de ★ 1.2k
0
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0
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833
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Fwd: [Bioc-devel] Changes in the %in% function for DNAStringSet?
13.0 years ago delhomme@embl.de ★ 1.2k
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0
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962
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Answer: A: Problems easyRNASeq
13.0 years ago delhomme@embl.de ★ 1.2k
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0
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2.7k
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Comment: C: Recommended gene model for DESeq
13.0 years ago delhomme@embl.de ★ 1.2k
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0
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2.2k
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Comment: C: How to convert from IRanges(List) to Rle(List)
13.0 years ago delhomme@embl.de ★ 1.2k
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2.2k
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Comment: C: How to convert from IRanges(List) to Rle(List)
13.0 years ago delhomme@embl.de ★ 1.2k
0
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1
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2.7k
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Comment: C: Recommended gene model for DESeq
13.0 years ago delhomme@embl.de ★ 1.2k
0
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10
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2.2k
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How to convert from IRanges(List) to Rle(List)
convert IRanges convert IRanges
updated 13.0 years ago by 25k • written 13.0 years ago by ★ 1.2k
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0
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2.3k
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Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
13.0 years ago delhomme@embl.de ★ 1.2k
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2
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2.3k
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Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
13.0 years ago delhomme@embl.de ★ 1.2k
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0
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2.7k
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Comment: C: Recommended gene model for DESeq
13.0 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.9k
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Comment: C: flip strand information in GappedAlignments or GRangesList Object
13.1 years ago delhomme@embl.de ★ 1.2k
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1
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2.6k
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Comment: C: running time: countOverlaps & summarizedOverlaps vs. HTSeq
13.1 years ago delhomme@embl.de ★ 1.2k
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1
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2.6k
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Comment: C: running time: countOverlaps & summarizedOverlaps vs. HTSeq
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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2.6k
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Comment: C: running time: countOverlaps & summarizedOverlaps vs. HTSeq
13.1 years ago delhomme@embl.de ★ 1.2k
0
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1
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2.6k
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Answer: A: running time: countOverlaps & summarizedOverlaps vs. HTSeq
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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2.7k
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Comment: C: how to map Affymetrix ID to ensemble gene ID
13.1 years ago delhomme@embl.de ★ 1.2k
0
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1
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2.7k
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Comment: C: how to map Affymetrix ID to ensemble gene ID
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.6k
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Comment: C: Question about hgu133plus2cdf?
13.1 years ago delhomme@embl.de ★ 1.2k
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0
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1.6k
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Answer: A: Question about hgu133plus2cdf?
13.1 years ago delhomme@embl.de ★ 1.2k
0
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1
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1.2k
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How to combine different annotation (chromosomic, genic) when using easyRNASeq (was easyRNASeq error)
RNASeq Annotation Organism biomaRt easyRNASeq RNASeq Annotation Organism biomaRt
updated 13.1 years ago by ▴ 350 • written 13.1 years ago by ★ 1.2k
0
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4
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1.9k
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easyRNASeq error
Sequencing Alignment Annotation Organism BSgenome biomaRt BSgenome easyRNASeq Sequencing
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.9k
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Answer: A: easyRNASeq error
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.9k
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Answer: A: easyRNASeq error
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.9k
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Answer: A: easyRNASeq error
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.9k
views
Answer: A: easyRNASeq error
13.1 years ago delhomme@embl.de ★ 1.2k
0
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0
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1.0k
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convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation convert genomeIntervals Annotation convert genomeIntervals
13.1 years ago delhomme@embl.de ★ 1.2k
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