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Comment: C: RNA-seq differentially expressed gene finding methods
10.1 years ago Paul Geeleher ★ 1.3k
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1
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1.5k
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Answer: A: Limma package and minimal number of genes
10.3 years ago Paul Geeleher ★ 1.3k
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1
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1.1k
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Answer: A: Gene expression and multivariables
10.4 years ago Paul Geeleher ★ 1.3k
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0
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2.0k
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Answer: A: GWAS with family data
10.5 years ago Paul Geeleher ★ 1.3k
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1
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1.4k
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Answer: A: recommend package for exon array analysis
10.6 years ago Paul Geeleher ★ 1.3k
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1
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1.3k
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Answer: A: help with array based microRNA data analysis
10.7 years ago Paul Geeleher ★ 1.3k
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0
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2.7k
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Comment: C: scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
10.8 years ago Paul Geeleher ★ 1.3k
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2.9k
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Comment: C: Average expression value from limma
11.4 years ago Paul Geeleher ★ 1.3k
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0
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2.9k
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Answer: A: Average expression value from limma
11.4 years ago Paul Geeleher ★ 1.3k
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0
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12k
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Comment: C: DESeq2 vs limma/voom: PCA completely different. How to proceed?
11.5 years ago Paul Geeleher ★ 1.3k
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0
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1.3k
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Comment: C: Microarray Analysis of Rat Gene 2.0 ST arrays
11.5 years ago Paul Geeleher ★ 1.3k
0
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0
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957
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Answer: A: transform gwaa.data (Genabel) to snp.matrix (chopsticks)
11.5 years ago Paul Geeleher ★ 1.3k
0
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0
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1.6k
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Answer: A: spline example from limma user's guide
11.5 years ago Paul Geeleher ★ 1.3k
0
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0
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898
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Answer: A: How to use 'ebayes' for small samples?
11.5 years ago Paul Geeleher ★ 1.3k
0
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0
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709
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Answer: A: Estimate how much a factor contributes to the variation
11.5 years ago Paul Geeleher ★ 1.3k
0
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0
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1.3k
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Comment: C: Fwd: statistical test for time course data
11.6 years ago Paul Geeleher ★ 1.3k
0
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0
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1.1k
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Answer: A: significance of correlation genes/miRNAs expression
11.8 years ago Paul Geeleher ★ 1.3k
0
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1
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1.1k
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Answer: A: correlation between two pathways' genes
11.8 years ago Paul Geeleher ★ 1.3k
0
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0
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977
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Answer: A: Some basic questions for two-color array
11.9 years ago Paul Geeleher ★ 1.3k
0
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0
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1.7k
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Answer: A: Difference number of probesets after RMA with Oligo package and APT
11.9 years ago Paul Geeleher ★ 1.3k
0
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1
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1.3k
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Answer: A: reviews for quality control
12.1 years ago Paul Geeleher ★ 1.3k
0
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2
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1.9k
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Answer: A: Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
12.2 years ago Paul Geeleher ★ 1.3k
0
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0
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1.1k
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Answer: A: differential gene set analysis
12.5 years ago Paul Geeleher ★ 1.3k
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0
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695
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Answer: A: Difficulty with limma contrast matrix creation
12.5 years ago Paul Geeleher ★ 1.3k
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0
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2.0k
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Answer: A: how GSEA phenotype label works?
12.5 years ago Paul Geeleher ★ 1.3k
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0
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2.0k
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Answer: A: Affymetrix Intronic Normalization Control Probes Differentially Expressed?
12.6 years ago Paul Geeleher ★ 1.3k
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1
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2.0k
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Comment: C: Loading quantiles normalized root data in XPS
12.6 years ago Paul Geeleher ★ 1.3k
0
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1
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1.7k
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Answer: A: Reading 5000 celfiles with ReadAffy
12.6 years ago Paul Geeleher ★ 1.3k
0
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1
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2.0k
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Comment: C: Loading quantiles normalized root data in XPS
12.6 years ago Paul Geeleher ★ 1.3k
0
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1
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2.0k
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Comment: C: Loading quantiles normalized root data in XPS
12.7 years ago Paul Geeleher ★ 1.3k
0
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2
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2.0k
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Comment: C: Loading quantiles normalized root data in XPS
12.7 years ago Paul Geeleher ★ 1.3k
0
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1
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2.0k
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Comment: C: Loading quantiles normalized root data in XPS
12.7 years ago Paul Geeleher ★ 1.3k
1
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0
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2.3k
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TopGO p-values VS DAVID p-values
Microarray GO Category topGO Microarray GO Category topGO
12.7 years ago Paul Geeleher ★ 1.3k
0
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1
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2.0k
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Comment: C: Loading quantiles normalized root data in XPS
12.7 years ago Paul Geeleher ★ 1.3k
0
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13
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2.0k
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Loading quantiles normalized root data in XPS
probe affy xps probe affy xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ★ 1.3k
0
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0
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1.3k
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Answer: A: Plot signal distribution in miRNA arrays
13.2 years ago Paul Geeleher ★ 1.3k
0
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0
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2.9k
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Answer: A: cause 'memory not mapped'
13.3 years ago Paul Geeleher ★ 1.3k
0
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0
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4.1k
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Comment: C: extract intensity values from AffyBatch
13.4 years ago Paul Geeleher ★ 1.3k
0
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0
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950
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miRNA target prediction algorithm setting used in RmiR.Hs.miRNA package.
miRNA RmiR miRNA RmiR
13.4 years ago Paul Geeleher ★ 1.3k
0
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0
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1.7k
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Answer: A: Limma, eBayes different sample size of groups and adjustment
13.4 years ago Paul Geeleher ★ 1.3k
0
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0
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4.4k
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Answer: A: convertion from SAM to BAM
13.5 years ago Paul Geeleher ★ 1.3k
0
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0
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3.9k
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Comment: C: package for collapsing probe id to entrezid or gene symbols
13.6 years ago Paul Geeleher ★ 1.3k
0
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0
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3.1k
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Comment: C: exonsBy() function from GenomicFeature, preserve transcript names?
13.7 years ago Paul Geeleher ★ 1.3k
1
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2
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3.1k
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exonsBy() function from GenomicFeature, preserve transcript names?
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ★ 1.3k
0
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1
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1.0k
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BiomaRt down?
biomaRt biomaRt
updated 13.7 years ago by ▴ 220 • written 13.7 years ago by ★ 1.3k
0
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0
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720
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Answer: A: regarding single colour agilent microarray data
13.7 years ago Paul Geeleher ★ 1.3k
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0
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1.0k
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Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe affy convert Annotation GO probe affy convert
13.7 years ago Paul Geeleher ★ 1.3k
0
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0
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1.3k
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Answer: A: Using annotation package how can I convert the probe > ID's to Gene names.
13.7 years ago Paul Geeleher ★ 1.3k
0
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0
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2.0k
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Answer: A: Analysing multiple-platform gene expression data
13.7 years ago Paul Geeleher ★ 1.3k
0
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1
reply
938
views
Answer: A: question about R package to get gene centric values
13.8 years ago Paul Geeleher ★ 1.3k
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