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Comment: C: graph::edgeMatrix() fails for signature(object="graphBAM")
11.8 years ago Robert Castelo ★ 3.4k
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1.3k
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Comment: C: graph::edgeMatrix() fails for signature(object="graphBAM")
11.8 years ago Robert Castelo ★ 3.4k
0
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5
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1.3k
views
graph::edgeMatrix() fails for signature(object="graphBAM")
updated 11.8 years ago by ▴ 470 • written 11.8 years ago by ★ 3.4k
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0
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1.4k
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Comment: C: RS-DBI driver error with org.Sc.sgd.db
11.8 years ago Robert Castelo ★ 3.4k
0
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1.4k
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Comment: C: RS-DBI driver error with org.Sc.sgd.db
11.8 years ago Robert Castelo ★ 3.4k
0
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1
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2.3k
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Answer: A: Error when running Gene Set Variant Analysis (GSVA)
11.9 years ago Robert Castelo ★ 3.4k
0
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4
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1.4k
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RS-DBI driver error with org.Sc.sgd.db
updated 11.9 years ago by ★ 7.2k • written 11.9 years ago by ★ 3.4k
0
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0
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3.3k
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.9 years ago Robert Castelo ★ 3.4k
0
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1
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1.5k
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gmapR problem using a GmapGenome package with gsnap()
GO BSgenome BSgenome gmapR GO BSgenome BSgenome gmapR
updated 11.9 years ago by ★ 11k • written 11.9 years ago by ★ 3.4k
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0
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2.5k
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GO term as "keytype" in GO.db
GO AnnotationDbi GO AnnotationDbi
12.0 years ago Robert Castelo ★ 3.4k
0
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1
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2.8k
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GO term as "keytype" in GO.db
GO AnnotationDbi GO AnnotationDbi
updated 12.0 years ago by 6.7k • written 12.0 years ago by ★ 3.4k
1
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1
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1.7k
views
Answer: A: where to find a list of housekeeping genes for Affy array (Gene 1.0 ST)
12.0 years ago Robert Castelo ★ 3.4k
0
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1
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3.7k
views
Answer: A: nsFilter error in genefilter
12.0 years ago Robert Castelo ★ 3.4k
0
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0
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1.6k
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Answer: A: GSVA
12.2 years ago Robert Castelo ★ 3.4k
0
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1
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1.6k
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GSVA
Microarray Pathways GSVA Microarray Pathways GSVA
12.2 years ago Robert Castelo ★ 3.4k
0
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0
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1.3k
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Comment: C: bug in graph::edgeData()
12.2 years ago Robert Castelo ★ 3.4k
0
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0
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1.3k
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Comment: C: bug in graph::edgeData()
12.2 years ago Robert Castelo ★ 3.4k
0
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3
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1.3k
views
bug in graph::edgeData()
graph graph
updated 12.2 years ago by ▴ 750 • written 12.2 years ago by ★ 3.4k
0
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0
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2.9k
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Comment: C: GSVA error
12.2 years ago Robert Castelo ★ 3.4k
0
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1
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2.9k
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Comment: C: GSVA error
12.2 years ago Robert Castelo ★ 3.4k
0
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1
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2.9k
views
Answer: A: GSVA error
12.2 years ago Robert Castelo ★ 3.4k
0
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1
reply
1.1k
views
graph::subGraph() problem with node attributes
graph graph
updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ★ 3.4k
0
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0
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1.1k
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[PATCH] Fix options in GSVA
Annotation GSVA Annotation GSVA
12.3 years ago Robert Castelo ★ 3.4k
0
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3
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3.1k
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[GSVA] Segfault with GSVA
RNASeq Microarray Annotation gcrma convert GSVA RNASeq Microarray Annotation gcrma GSVA
updated 12.3 years ago by ▴ 230 • written 12.3 years ago by ★ 3.4k
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1
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3.1k
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Comment: C: parallel and GSVA
12.3 years ago Robert Castelo ★ 3.4k
0
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1
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3.1k
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Answer: A: parallel and GSVA
12.3 years ago Robert Castelo ★ 3.4k
0
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0
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1.3k
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correlation between two pathways' genes
Microarray Pathways GSEABase Microarray Pathways GSEABase
12.4 years ago Robert Castelo ★ 3.4k
0
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0
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1.3k
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Comment: C: identifying sets of correlated genes
12.4 years ago Robert Castelo ★ 3.4k
0
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0
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1.3k
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Comment: C: identifying sets of correlated genes
12.4 years ago Robert Castelo ★ 3.4k
0
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1
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1.3k
views
Answer: A: identifying sets of correlated genes
12.4 years ago Robert Castelo ★ 3.4k
0
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0
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1.4k
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Answer: A: EdgeR condition-specific dispersion
12.5 years ago Robert Castelo ★ 3.4k
0
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0
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1.4k
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Comment: C: Influence of expression correlation on false positive ratio
12.8 years ago Robert Castelo ★ 3.4k
0
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1
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3.5k
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Comment: C: Rsubread crashes in 32bit linux
12.9 years ago Robert Castelo ★ 3.4k
0
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15
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3.5k
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Rsubread crashes in 32bit linux
Yeast Rsubread Yeast Rsubread
updated 12.9 years ago by ★ 3.6k • written 12.9 years ago by ★ 3.4k
0
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0
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4.6k
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Comment: C: edgeR outlier question
13.0 years ago Robert Castelo ★ 3.4k
0
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1
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1.4k
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Comment: C: how to rank affy probesets by their probe-effect magnitude
13.1 years ago Robert Castelo ★ 3.4k
0
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0
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1.4k
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Comment: C: how to rank affy probesets by their probe-effect magnitude
13.1 years ago Robert Castelo ★ 3.4k
0
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5
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1.4k
views
how to rank affy probesets by their probe-effect magnitude
probe affy affyPLM probe affy affyPLM
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 3.4k
0
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0
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2.0k
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Comment: C: question about normalization of RNAseq by tweeDEseq using TMM from edgeR
13.2 years ago Robert Castelo ★ 3.4k
0
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1
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2.0k
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Answer: A: question about normalization of RNAseq by tweeDEseq using TMM from edgeR
13.2 years ago Robert Castelo ★ 3.4k
0
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0
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3.7k
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Answer: A: how edgeR control the outliers?
13.2 years ago Robert Castelo ★ 3.4k
0
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1
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5.9k
views
Comment: C: Rsubread package not available? Warning resolved
updated 13.4 years ago by 52k • written 13.4 years ago by ★ 3.4k
0
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1
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1.2k
views
DESeq Error: pobs == ps[kAs[i] + 1] is not TRUE
DESeq DESeq
updated 13.4 years ago by ★ 3.8k • written 13.4 years ago by ★ 3.4k
0
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2
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3.4k
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Comment: C: GSVA: using Entrez ID's as identifiers
13.4 years ago Robert Castelo ★ 3.4k
0
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1
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3.4k
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Answer: A: GSVA: using Entrez ID's as identifiers
13.4 years ago Robert Castelo ★ 3.4k
0
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0
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3.4k
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Comment: C: GSVA: using Entrez ID's as identifiers
13.4 years ago Robert Castelo ★ 3.4k
2
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0
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4.0k
views
Answer: A: convert GeneSetCollection to a list
13.4 years ago Robert Castelo ★ 3.4k
0
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1
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3.4k
views
Comment: C: GSVA: using Entrez ID's as identifiers
13.4 years ago Robert Castelo ★ 3.4k
0
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1
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3.4k
views
Answer: A: GSVA: using Entrez ID's as identifiers
13.4 years ago Robert Castelo ★ 3.4k
0
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1
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4.1k
views
Answer: A: problem with using GSVA package
13.5 years ago Robert Castelo ★ 3.4k
466 results • Page 8 of 10
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