Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
1.5k
views
Answer: A: Table expression data from GEO file
5.0 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
2.6k
views
Answer: A: Best way to include RIN in differential expression design
5.0 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
785
views
Comment: C: Detection of genes associated with polymorphism
5.0 years ago Robert Castelo ★ 3.4k
2
votes
0
replies
1.4k
views
Comment: C: Rsamtools summarizeOverlaps produces low counts
5.0 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
905
views
Comment: C: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
5.1 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
1.4k
views
Comment: C: Information on genomic sequences via Seqinfo failing
5.1 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
905
views
Answer: A: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
5.1 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
4.4k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.1 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
4.4k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.1 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
4.4k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.1 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
4.4k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.1 years ago Robert Castelo ★ 3.4k
1
vote
2
replies
4.4k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.1 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
4.4k
views
Answer: A: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.1 years ago Robert Castelo ★ 3.4k
3
votes
1
reply
2.5k
views
Comment: C: GSEABase - Map gene/transcript IDs to GOslims?
5.2 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
2.5k
views
Answer: A: GSEABase - Map gene/transcript IDs to GOslims?
5.2 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
4.6k
views
Comment: C: GSEABase - View/extract GO terms mapped to each GOslim
5.2 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
830
views
Answer: A: generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw fi
5.3 years ago • updated 5.2 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
936
views
Answer: A: how to set strandMode in summarizeOverlaps()?
5.3 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
1.3k
views
Answer: A: gpr format microarray analysis
5.3 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
2.9k
views
Comment: C: Dealing with duplicated genes in camera gene set testing
5.3 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
2.9k
views
Comment: C: Dealing with duplicated genes in camera gene set testing
5.3 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
4.7k
views
Comment: C: mm10 phastCons data for use with ATACseqQC
5.3 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
4.7k
views
Comment: C: mm10 phastCons data for use with ATACseqQC
5.3 years ago Robert Castelo ★ 3.4k
1
vote
2
replies
2.9k
views
Answer: A: Dealing with duplicated genes in camera gene set testing
5.3 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
4.5k
views
Answer: A: How to build and map to a "pre-mRNA" reference transcriptome for single nucleus
5.5 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
1.9k
views
Comment: C: SVA for repeated measures design
5.6 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
1.9k
views
Answer: A: SVA for repeated measures design
5.6 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
4.3k
views
Answer: A: Collecting unmapped RNA-seq reads
5.6 years ago Robert Castelo ★ 3.4k
0
votes
2
replies
7.0k
views
Comment: C: GSVA on RNAseq data
6.0 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
7.0k
views
Answer: A: GSVA on RNAseq data
6.0 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
1.2k
views
Answer: A: GSVA lots of positive values, is this expected behavior?
6.0 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
4.3k
views
Comment: C: Differential expression on GSVA scores using LIMMA
6.1 years ago Robert Castelo ★ 3.4k
4
votes
1
reply
4.3k
views
Answer: A: Differential expression on GSVA scores using LIMMA
6.1 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
3.3k
views
Answer: A: Are singscore scores comparable between gene sets?
6.1 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
1.8k
views
Answer: A: Hill shape p-value histogram after differential miRNA expression analysis with D
6.2 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
1.5k
views
Comment: C: Efficient counting of nucleotide changes in short-reads
6.4 years ago Robert Castelo ★ 3.4k
1
vote
3
replies
1.5k
views
Efficient counting of nucleotide changes in short-reads
GenomicAlignments Biostrings
updated 6.4 years ago by ★ 11k • written 6.4 years ago by ★ 3.4k
2
votes
0
replies
1.4k
views
Answer: A: GSVA tutorial brainTxDb oligodendrocytic_dn neuronal_dn are same genesets
6.6 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
2.5k
views
Comment: C: Meaning of zero for ssGESA value calculated by GSVA package
6.8 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
2.5k
views
Answer: A: Meaning of zero for ssGESA value calculated by GSVA package
6.8 years ago Robert Castelo ★ 3.4k
1
vote
0
replies
1.8k
views
Answer: A: GSVA with NanoString nCounter Data - Pre-Processing
6.8 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
8.5k
views
Comment: C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
6.9 years ago Robert Castelo ★ 3.4k
2
votes
1
reply
8.5k
views
Comment: C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
6.9 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
2.3k
views
Comment: C: Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
6.9 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
8.5k
views
Comment: C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
6.9 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
3.0k
views
Comment: C: Problem using GOTERM[["x"]] from GO.db
6.9 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
3.0k
views
Comment: C: Problem using GOTERM[["x"]] from GO.db
6.9 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
3.0k
views
Comment: C: Problem using GOTERM[["x"]] from GO.db
6.9 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
3.0k
views
Comment: C: Problem using GOTERM[["x"]] from GO.db
6.9 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
2.5k
views
Answer: A: Input genes for GSVA
7.0 years ago Robert Castelo ★ 3.4k
466 results • Page 4 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6