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Comment: Comment: GenomicScores package: availableGScores and getGScores functions not working
3.6 years ago Robert Castelo ★ 3.4k
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Comment: Comment: GenomicScores package: availableGScores and getGScores functions not working
3.6 years ago Robert Castelo ★ 3.4k
0
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2
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1.9k
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Answer: Answer: GenomicScores package: availableGScores and getGScores functions not working
3.6 years ago Robert Castelo ★ 3.4k
2
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1
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2.8k
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Answer: Answer: Questions regard to GSVA and Limma
3.8 years ago Robert Castelo ★ 3.4k
2
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1
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1.1k
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Answer: Answer: Turn of GSVA filtering for method ssGSEA
3.8 years ago Robert Castelo ★ 3.4k
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Answer: Answer: Issue with GSVA using dgCMatrix
3.8 years ago Robert Castelo ★ 3.4k
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Answer: Answer: GSVA Problem
3.9 years ago Robert Castelo ★ 3.4k
0
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1
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3.2k
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Comment: Comment: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
4.0 years ago Robert Castelo ★ 3.4k
2
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1
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3.2k
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Answer: Answer: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
4.0 years ago Robert Castelo ★ 3.4k
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3.3k
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Comment: Comment: Error in .local(expr, gset.idx.list, ...) : Please install the nnotation pack
4.1 years ago Robert Castelo ★ 3.4k
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
4.2 years ago Robert Castelo ★ 3.4k
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1.9k
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Answer: Answer: How to set mod0 in sva analysis
4.2 years ago Robert Castelo ★ 3.4k
2
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1
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2.2k
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Comment: Comment: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
4.2 years ago Robert Castelo ★ 3.4k
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2
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8.4k
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Comment: Comment: GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
4.2 years ago Robert Castelo ★ 3.4k
3
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1
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2.2k
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Answer: Answer: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
4.2 years ago Robert Castelo ★ 3.4k
0
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1
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8.4k
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Answer: Answer: GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
4.2 years ago Robert Castelo ★ 3.4k
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0
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2.7k
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Comment: Comment: Selecting or not selecting samples before running GSVA
4.3 years ago Robert Castelo ★ 3.4k
1
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1
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2.7k
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Answer: Answer: Selecting or not selecting samples before running GSVA
4.3 years ago Robert Castelo ★ 3.4k
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2.1k
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Comment: Comment: GSVA on gene sets with 2 genes
4.5 years ago Robert Castelo ★ 3.4k
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1
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2.1k
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Answer: A: GSVA on gene sets with 2 genes
4.5 years ago Robert Castelo ★ 3.4k
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2.1k
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Comment: C: Error in GSVA: Error in dimnames(x) <- dn
4.5 years ago Robert Castelo ★ 3.4k
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1
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2.1k
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Comment: C: Error in GSVA: Error in dimnames(x) <- dn
4.5 years ago Robert Castelo ★ 3.4k
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1.6k
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Answer: A: Extract GSVA gene rank matrix
4.7 years ago Robert Castelo ★ 3.4k
1
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3.1k
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Answer: A: pre-filtering gene sets for GSVA/ssGSEA
4.8 years ago Robert Castelo ★ 3.4k
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1
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3.2k
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Answer: A: Spearman correlation for RNA SEQ data
4.8 years ago Robert Castelo ★ 3.4k
3
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2
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5.1k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
4.8 years ago Robert Castelo ★ 3.4k
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1
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4.8k
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Comment: C: How to compare two or more GSVA outputs, when it is not possible to run GSVA at
4.8 years ago Robert Castelo ★ 3.4k
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4.8k
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Comment: C: How to compare two or more GSVA outputs, when it is not possible to run GSVA at
4.8 years ago Robert Castelo ★ 3.4k
0
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1
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4.8k
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Comment: C: How to compare two or more GSVA outputs, when it is not possible to run GSVA at
4.8 years ago Robert Castelo ★ 3.4k
0
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1
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4.8k
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Comment: C: How to compare two or more GSVA outputs, when it is not possible to run GSVA at
4.8 years ago Robert Castelo ★ 3.4k
2
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1
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2.4k
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Answer: A: Using GSVA All the pathway score are same
4.8 years ago Robert Castelo ★ 3.4k
1
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1
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4.8k
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Answer: A: How to compare two or more GSVA outputs, when it is not possible to run GSVA at
4.8 years ago Robert Castelo ★ 3.4k
0
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0
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2.0k
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Answer: A: GSVA on integrated/batch corrected scRNAseq data
4.9 years ago Robert Castelo ★ 3.4k
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2.5k
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Comment: C: Bioconductor vs BioConductor
4.9 years ago Robert Castelo ★ 3.4k
0
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0
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1.9k
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Answer: A: Error while installing GSVA
4.9 years ago Robert Castelo ★ 3.4k
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1
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2.5k
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Comment: C: Bioconductor vs BioConductor
4.9 years ago Robert Castelo ★ 3.4k
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3.3k
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Comment: C: GSVA (running group samples separately)
4.9 years ago Robert Castelo ★ 3.4k
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1
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3.3k
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Comment: C: GSVA (running group samples separately)
4.9 years ago Robert Castelo ★ 3.4k
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1
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3.3k
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Answer: A: GSVA (running group samples separately)
5.0 years ago Robert Castelo ★ 3.4k
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1
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3.3k
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Comment: C: GSVA (running group samples separately)
5.0 years ago Robert Castelo ★ 3.4k
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1
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3.3k
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Comment: C: GSVA (running group samples separately)
5.0 years ago Robert Castelo ★ 3.4k
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1
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3.3k
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Comment: C: GSVA (running group samples separately)
5.0 years ago Robert Castelo ★ 3.4k
1
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0
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1.2k
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Comment: C: Why BiocManager try to reinstall dependencies already installed?
5.0 years ago Robert Castelo ★ 3.4k
1
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1
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1.2k
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Answer: A: Why BiocManager try to reinstall dependencies already installed?
5.0 years ago Robert Castelo ★ 3.4k
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1
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4.1k
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Comment: C: Unassigned reads in Rsubread FeatureCounts
5.0 years ago Robert Castelo ★ 3.4k
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0
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3.6k
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Comment: C: Updating Gene Annotation in GeneSetCollection {GSEABase}
5.0 years ago Robert Castelo ★ 3.4k
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0
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3.6k
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Comment: C: Updating Gene Annotation in GeneSetCollection {GSEABase}
5.0 years ago Robert Castelo ★ 3.4k
1
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2
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3.6k
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Comment: C: Updating Gene Annotation in GeneSetCollection {GSEABase}
5.0 years ago Robert Castelo ★ 3.4k
1
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1
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3.6k
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Answer: A: Updating Gene Annotation in GeneSetCollection {GSEABase}
5.0 years ago Robert Castelo ★ 3.4k
1
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0
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2.5k
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Answer: A: Method and kcdf arguments in gsva package
5.0 years ago Robert Castelo ★ 3.4k
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