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Answer: Answer: VariantFiltering error
22 months ago Robert Castelo ★ 3.4k
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Answer: Answer: GSVA with and without absolute scaling method
2.0 years ago Robert Castelo ★ 3.4k
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1.1k
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outdated GEOmetadb.sqlite
GEOmetadb
2.2 years ago • updated 15 months ago Robert Castelo ★ 3.4k
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Comment: Comment: GSVA: Error loading interactive web app
2.2 years ago Robert Castelo ★ 3.4k
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1.3k
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Comment: Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
2.2 years ago Robert Castelo ★ 3.4k
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1
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1.3k
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Answer: Answer: GSVA: Error loading interactive web app
2.2 years ago Robert Castelo ★ 3.4k
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1.3k
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Comment: Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
2.2 years ago Robert Castelo ★ 3.4k
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5
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1.3k
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Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
GenomicAlignments
2.2 years ago Robert Castelo ★ 3.4k
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3.1k
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Comment: Comment: Atena package - error (new user)
2.3 years ago Robert Castelo ★ 3.4k
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3.1k
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Comment: Comment: Atena package - error (new user)
2.3 years ago Robert Castelo ★ 3.4k
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2.3k
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Comment: Comment: GSVA results interpretation
2.3 years ago Robert Castelo ★ 3.4k
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1
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2.3k
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Answer: Answer: GSVA results interpretation
2.3 years ago Robert Castelo ★ 3.4k
0
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1
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3.1k
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Comment: Comment: Atena package - error (new user)
2.3 years ago Robert Castelo ★ 3.4k
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0
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2.4k
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Comment: Comment: 'combined score' calculation with singscore vs gsva
2.5 years ago Robert Castelo ★ 3.4k
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1
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2.4k
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Comment: Comment: 'combined score' calculation with singscore vs gsva
2.5 years ago Robert Castelo ★ 3.4k
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1
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2.4k
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Answer: Answer: 'combined score' calculation with singscore vs gsva
2.5 years ago Robert Castelo ★ 3.4k
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0
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3.6k
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Answer: Answer: Properly constructing a hypergeometric test
2.5 years ago Robert Castelo ★ 3.4k
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8.4k
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Comment: Comment: GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
2.6 years ago Robert Castelo ★ 3.4k
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1.6k
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Comment: Comment: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
2.6 years ago Robert Castelo ★ 3.4k
1
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1
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2.6k
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Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.7 years ago Robert Castelo ★ 3.4k
1
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2
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2.6k
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Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.7 years ago Robert Castelo ★ 3.4k
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0
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2.6k
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Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.7 years ago Robert Castelo ★ 3.4k
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1
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1.6k
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Comment: Comment: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
2.8 years ago Robert Castelo ★ 3.4k
2
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1
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1.6k
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Answer: Answer: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
2.8 years ago Robert Castelo ★ 3.4k
1
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1
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3.1k
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Comment: Comment: Why Negative value from GSVA
2.8 years ago Robert Castelo ★ 3.4k
2
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1
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3.1k
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Answer: Answer: Why Negative value from GSVA
2.8 years ago Robert Castelo ★ 3.4k
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1
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3.3k
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Answer: Answer: Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
2.8 years ago Robert Castelo ★ 3.4k
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0
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1.4k
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Answer: Answer: GC content
2.8 years ago Robert Castelo ★ 3.4k
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0
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3.1k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.8 years ago Robert Castelo ★ 3.4k
0
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1
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3.1k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.9 years ago Robert Castelo ★ 3.4k
1
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1
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1.6k
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Answer: Answer: Can GSVA be applied in several sample type and each type only have two replicate
2.9 years ago Robert Castelo ★ 3.4k
2
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1
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2.2k
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Answer: Answer: How to run GSVA with partially NA genes
2.9 years ago Robert Castelo ★ 3.4k
0
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2
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3.1k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
3.0 years ago Robert Castelo ★ 3.4k
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0
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4.1k
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Comment: Comment: Unassigned reads in Rsubread FeatureCounts
3.0 years ago Robert Castelo ★ 3.4k
2
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0
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1.5k
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Answer: Answer: Why does BSgenome contain more chromosomes of human and mouse species then they
3.0 years ago Robert Castelo ★ 3.4k
1
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0
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1.9k
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Answer: Answer: org.Hs.eg.db，Error: could not find function ".libPath"
3.0 years ago Robert Castelo ★ 3.4k
1
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1
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3.1k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
3.0 years ago Robert Castelo ★ 3.4k
1
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0
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9.3k
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Comment: Comment: GSVA and ssGSEA output differences
3.0 years ago Robert Castelo ★ 3.4k
0
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1
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9.3k
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Answer: Answer: GSVA and ssGSEA output differences
3.1 years ago Robert Castelo ★ 3.4k
0
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2
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3.1k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
3.1 years ago Robert Castelo ★ 3.4k
0
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1
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3.1k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
3.1 years ago Robert Castelo ★ 3.4k
2
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1
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3.1k
views
Answer: Answer: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
3.1 years ago Robert Castelo ★ 3.4k
1
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0
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2.2k
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Answer: Answer: Cleaning GeneSets from GSEA
3.1 years ago Robert Castelo ★ 3.4k
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0
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2.1k
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Answer: Answer: GSEA using custom GO annotations
3.1 years ago Robert Castelo ★ 3.4k
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0
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1.1k
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Answer: Answer: Running PLAGE gets killed
3.1 years ago Robert Castelo ★ 3.4k
0
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0
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1.9k
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Answer: Answer: GSVA: for a pathway, can enrichment scores of all samples be negative?
3.1 years ago Robert Castelo ★ 3.4k
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0
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1.0k
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
3.2 years ago Robert Castelo ★ 3.4k
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0
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1.9k
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Answer: Answer: GSVA package normalization on gene-length ?
3.4 years ago Robert Castelo ★ 3.4k
1
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0
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1.5k
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Comment: Comment: How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
3.4 years ago Robert Castelo ★ 3.4k
0
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1
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2.3k
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Answer: Answer: GOstats - are significantly enriched GO terms with a small "size" meaningful?
3.4 years ago Robert Castelo ★ 3.4k
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