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558
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Answer: Answer: cannot download atena annotation for human
11 days ago Robert Castelo ★ 3.4k
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Comment: Comment: GSVA on RNAseq data
9 weeks ago Robert Castelo ★ 3.4k
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Answer: Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
12 weeks ago Robert Castelo ★ 3.4k
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2.3k
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Comment: Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
4 months ago Robert Castelo ★ 3.4k
1
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0
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777
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Comment: Comment: Identifying potentially associated gene set to drug response using GSVA
4 months ago Robert Castelo ★ 3.4k
1
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1
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715
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Answer: Answer: Allele frequencies for ALL alleles of one SNP ?
5 months ago Robert Castelo ★ 3.4k
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1
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777
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Answer: Answer: Identifying potentially associated gene set to drug response using GSVA
5 months ago Robert Castelo ★ 3.4k
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1
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429
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Answer: Answer: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w
5 months ago Robert Castelo ★ 3.4k
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1
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4.4k
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Comment: Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5 months ago Robert Castelo ★ 3.4k
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1.9k
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Comment: Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
6 months ago Robert Castelo ★ 3.4k
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1
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1.9k
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Answer: Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
6 months ago Robert Castelo ★ 3.4k
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1
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1.3k
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Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
written 2.4 years ago by ★ 3.4k
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1
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609
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Answer: Answer: rtracklayer accessing UCSC data table not working
7 months ago Robert Castelo ★ 3.4k
1
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1
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2.0k
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Comment: Comment: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
9 months ago Robert Castelo ★ 3.4k
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2.0k
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Answer: Answer: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
9 months ago Robert Castelo ★ 3.4k
0
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3.7k
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Comment: Comment: How should I run ssGSEA Hallmark Enrichment Analysis?
10 months ago Robert Castelo ★ 3.4k
1
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1
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716
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Answer: Answer: Interpretation of GSVA with absRanking=TRUE
10 months ago Robert Castelo ★ 3.4k
0
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0
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1.5k
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Comment: Comment: GSVA function
11 months ago Robert Castelo ★ 3.4k
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1
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1.5k
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Answer: Answer: GSVA function
11 months ago Robert Castelo ★ 3.4k
0
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1.4k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 months ago Robert Castelo ★ 3.4k
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1
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1.4k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 months ago Robert Castelo ★ 3.4k
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1
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1.4k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 months ago Robert Castelo ★ 3.4k
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1.5k
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Answer: Answer: Method to find pathways different between 2 groups
11 months ago Robert Castelo ★ 3.4k
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2
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2.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
11 months ago Robert Castelo ★ 3.4k
2
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1
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2.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
12 months ago Robert Castelo ★ 3.4k
2
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1
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2.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
12 months ago Robert Castelo ★ 3.4k
2
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1
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2.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
12 months ago Robert Castelo ★ 3.4k
1
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1
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4.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
12 months ago Robert Castelo ★ 3.4k
1
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1
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5.1k
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Answer: Answer: GSVA error
12 months ago Robert Castelo ★ 3.4k
1
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0
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4.6k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
12 months ago Robert Castelo ★ 3.4k
0
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1
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4.6k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
12 months ago Robert Castelo ★ 3.4k
1
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1
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4.6k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
12 months ago Robert Castelo ★ 3.4k
1
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1
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4.6k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
12 months ago Robert Castelo ★ 3.4k
0
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1
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623
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Answer: Answer: Storing directories inside an ExperimentHub package?
12 months ago Robert Castelo ★ 3.4k
1
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1
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4.6k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
12 months ago Robert Castelo ★ 3.4k
1
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0
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1.2k
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Comment: Comment: GSVA on separate healthy and disease datasets
12 months ago Robert Castelo ★ 3.4k
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1
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1.2k
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Answer: Answer: GSVA on separate healthy and disease datasets
12 months ago Robert Castelo ★ 3.4k
1
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1
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3.4k
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Comment: Comment: How to make boxplot with pairwise and overall p value from Limma
12 months ago Robert Castelo ★ 3.4k
0
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1
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1.4k
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Comment: Comment: Obtaining pheno data from CEL files
12 months ago Robert Castelo ★ 3.4k
2
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2
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4.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
12 months ago Robert Castelo ★ 3.4k
1
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1
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2.5k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
13 months ago Robert Castelo ★ 3.4k
1
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0
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1.4k
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Answer: Answer: Impute does not work
14 months ago Robert Castelo ★ 3.4k
0
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1
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485
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error with spatialDE::run() and basilisk i/f
basilisk spatialDE
updated 14 months ago by 68k • written 14 months ago by ★ 3.4k
2
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0
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1.1k
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Comment: Comment: outdated GEOmetadb.sqlite
15 months ago Robert Castelo ★ 3.4k
0
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0
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994
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Answer: Answer: Unexpected results for a differential expression analysis between males and fema
16 months ago Robert Castelo ★ 3.4k
0
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0
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1.4k
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Comment: Comment: Obtaining rsIDs with ENSG and variant ID information
16 months ago Robert Castelo ★ 3.4k
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1
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1.4k
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Answer: Answer: Obtaining rsIDs with ENSG and variant ID information
16 months ago Robert Castelo ★ 3.4k
2
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1
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3.7k
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Answer: Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
17 months ago Robert Castelo ★ 3.4k
0
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0
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754
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Answer: Answer: GSVA exceeds 1
19 months ago Robert Castelo ★ 3.4k
3
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0
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2.6k
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Answer: Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
21 months ago Robert Castelo ★ 3.4k
466 results • Page 1 of 10
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