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Answer: A: Can edgeR be used on GO terms?
8.0 years ago Luo Weijun ★ 1.6k
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Answer: A: Error: Pathway analysis using Sleuth results
8.2 years ago Luo Weijun ★ 1.6k
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Comment: C: Questions about Pathview, maybe also gage
8.2 years ago Luo Weijun ★ 1.6k
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1.9k
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Answer: A: GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
8.2 years ago Luo Weijun ★ 1.6k
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Answer: A: GO slim data for GAGE GSEA analysis
8.3 years ago Luo Weijun ★ 1.6k
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Answer: A: How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow
8.3 years ago Luo Weijun ★ 1.6k
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Answer: A: Gene Ontology and Gene Set Enrichment
8.4 years ago Luo Weijun ★ 1.6k
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Job: Bioinformatics Postdoc or Software Developer at UNC Charlotte, NC, USA
web php mysql javascript R Job
8.6 years ago • updated 8.5 years ago Luo Weijun ★ 1.6k
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Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
8.6 years ago • updated 8.5 years ago Luo Weijun ★ 1.6k
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Answer: A: Pathview color code and gene homolog handling?
8.5 years ago Luo Weijun ★ 1.6k
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2.7k
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Answer: A: GO slim data for GAGE GSEA analysis
8.5 years ago Luo Weijun ★ 1.6k
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Answer: A: Pathview & topGO
8.5 years ago Luo Weijun ★ 1.6k
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1.7k
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Answer: A: Pathview: Exporting non native KEGG pathway ignoring same.layer argument
8.5 years ago Luo Weijun ★ 1.6k
2
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Answer: A: Pathview: Exporting non native KEGG pathway to PNG
8.6 years ago Luo Weijun ★ 1.6k
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Answer: A: Using pathview with uncommon species leads to Errors
8.6 years ago Luo Weijun ★ 1.6k
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1.8k
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Answer: A: DESeq2 rlog as input for GAGE
8.7 years ago Luo Weijun ★ 1.6k
2
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3.5k
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Answer: A: Why Pathview shows just red color (up-regulated genes) on a pathway?
8.7 years ago Luo Weijun ★ 1.6k
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Answer: A: Error in using Pathview package. Do not print the pathways provided by GAGE anal
8.7 years ago Luo Weijun ★ 1.6k
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Comment: C: Error in using Pathview package. Do not print the pathways provided by GAGE anal
8.7 years ago Luo Weijun ★ 1.6k
1
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Answer: A: Please help with pathway analysis using Pathview
8.7 years ago Luo Weijun ★ 1.6k
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4.4k
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Answer: A: Error in using Pathview package. Do not print the pathways provided by GAGE anal
8.8 years ago Luo Weijun ★ 1.6k
0
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1
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4.4k
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Answer: A: Error in using Pathview package. Do not print the pathways provided by GAGE anal
8.8 years ago Luo Weijun ★ 1.6k
0
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2.7k
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Comment: C: Gage and setp argument
8.8 years ago Luo Weijun ★ 1.6k
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Answer: A: Gage and setp argument
8.8 years ago Luo Weijun ★ 1.6k
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2.7k
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Comment: C: Gage and setp argument
8.8 years ago Luo Weijun ★ 1.6k
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2.2k
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Answer: A: Pathview: visualization of data
9.0 years ago Luo Weijun ★ 1.6k
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Comment: C: Discrepancy in gene set size between gage() and geneData()
9.0 years ago Luo Weijun ★ 1.6k
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Answer: A: Using Gage and pathview with previously processed data
9.0 years ago Luo Weijun ★ 1.6k
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Answer: A: Discrepancy in gene set size between gage() and geneData()
9.1 years ago Luo Weijun ★ 1.6k
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Answer: A: How to perform pathway analysis of Candida albicans using pathview?
9.2 years ago Luo Weijun ★ 1.6k
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Answer: A: Pathview None of the genes or compounds mapped to the pathway
9.2 years ago Luo Weijun ★ 1.6k
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1.5k
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Answer: A: embed url in pathview images
9.2 years ago Luo Weijun ★ 1.6k
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1.7k
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Answer: A: GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set a
9.3 years ago Luo Weijun ★ 1.6k
1
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1
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2.7k
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Answer: A: Explanation of warning output of pathview regarding visualization of a KEGG path
9.3 years ago Luo Weijun ★ 1.6k
2
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2
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2.7k
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Answer: A: Explanation of warning output of pathview regarding visualization of a KEGG path
9.3 years ago Luo Weijun ★ 1.6k
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2.8k
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Answer: A: Input file of NGS data for Pathview
9.4 years ago Luo Weijun ★ 1.6k
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3.2k
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Answer: A: Gene Symbol with Pathview
9.4 years ago Luo Weijun ★ 1.6k
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3.2k
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Answer: A: Gene Symbol with Pathview
9.4 years ago Luo Weijun ★ 1.6k
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1.9k
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Answer: A: Using pathview() with custom graphNEL objects
9.5 years ago Luo Weijun ★ 1.6k
0
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2.7k
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Answer: A: GAGE kegg.gsets function does not work: 'names' attribute [1] must be the same l
9.5 years ago Luo Weijun ★ 1.6k
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Answer: A: Fixing download.kegg, from pathview(), which returns empty xml
9.5 years ago Luo Weijun ★ 1.6k
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1
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3.7k
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Comment: C: Fixing download.kegg, from pathview(), which returns empty xml
9.5 years ago Luo Weijun ★ 1.6k
2
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2.0k
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Answer: A: Output from pathview does not seem to match input
9.7 years ago Luo Weijun ★ 1.6k
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3.6k
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Comment: C: Urgent: Do GAGE applicable for non model species?
9.7 years ago Luo Weijun ★ 1.6k
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3.6k
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Answer: A: Urgent: Do GAGE applicable for non model species?
9.7 years ago Luo Weijun ★ 1.6k
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GAGE/Pathview now support 3000 KEGG species and 19 GO species (with BioC 2.14)
GO gage pathview GO gage pathview
updated 9.7 years ago by ▴ 10 • written 10.8 years ago by ★ 1.6k
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4.1k
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Answer: A: Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
9.7 years ago Luo Weijun ★ 1.6k
0
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1
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3.2k
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Comment: C: Gene set enrichment analysis with gage package returning NaN p-values
9.9 years ago Luo Weijun ★ 1.6k
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1
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3.2k
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Comment: C: Gene set enrichment analysis with gage package returning NaN p-values
9.9 years ago Luo Weijun ★ 1.6k
0
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1
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3.2k
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Answer: A: Gene set enrichment analysis with gage package returning NaN p-values
9.9 years ago Luo Weijun ★ 1.6k
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