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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.9 years ago twtoal ▴ 10
0
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1
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1.6k
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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.9 years ago twtoal ▴ 10
1
vote
5
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1.6k
views
PureCN C (integer segment copy number) in curated samples
PureC PureCN
updated 2.9 years ago by ▴ 130 • written 2.9 years ago by ▴ 10
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2
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1.2k
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PureCN COSMIC VCF via PureCN.R - is there an option?
PureCN COSMIC
updated 3.1 years ago by ▴ 130 • written 3.1 years ago by ▴ 10
0
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1
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854
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PureCN performance of somatic/germline status prediction without matched normal?
SomaticMutation GermlineMutation PureCN
updated 3.1 years ago by ▴ 130 • written 3.1 years ago by ▴ 10
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0
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1.0k
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Comment: Comment: Corrupt data in Sex column of .csv file
3.4 years ago twtoal ▴ 10
0
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3
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1.0k
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Corrupt data in Sex column of .csv file
PureCN
3.4 years ago twtoal ▴ 10
0
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0
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1.0k
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Comment: Comment: Corrupt data in Sex column of .csv file
3.4 years ago twtoal ▴ 10
0
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0
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1.4k
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Comment: C: PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
4.3 years ago twtoal ▴ 10
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2
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1.4k
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PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
PureCN ASCAT purity ploidy multi-regional sequencing
4.3 years ago twtoal ▴ 10
0
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1
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1.3k
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Comment: C: PureCN gene LOH very common, amp/del not
4.4 years ago twtoal ▴ 10
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3
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1.3k
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PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 4.4 years ago by ▴ 130 • written 4.4 years ago by ▴ 10
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0
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1.1k
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Comment: C: Why is PureCN LOH file missing some segments
4.6 years ago twtoal ▴ 10
0
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1
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1.1k
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Comment: C: Why is PureCN LOH file missing some segments
4.6 years ago twtoal ▴ 10
0
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4
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1.1k
views
Why is PureCN LOH file missing some segments
purecn loh
4.6 years ago twtoal ▴ 10
0
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0
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283
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PureCN Raw Coverage Available?
PureCN coverage raw_coverage
4.6 years ago twtoal ▴ 10
0
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2
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1.3k
views
PureCN version clashes at GitHub and Bioconductor
version PureCN
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 10
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0
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1.1k
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Comment: C: callLOH output file NA values
5.4 years ago twtoal ▴ 10
0
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1
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1.1k
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Comment: C: callLOH output file NA values
5.4 years ago twtoal ▴ 10
0
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3
replies
1.1k
views
callLOH output file NA values
PureCN NA values
updated 5.4 years ago by ▴ 130 • written 5.4 years ago by ▴ 10
0
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1
reply
1.2k
views
PureCN.R warning "duplicate keys in header will be forced to unique rownames"
PureCN
updated 5.4 years ago by ▴ 130 • written 5.4 years ago by ▴ 10
0
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1
reply
992
views
Chromosome arm loss and --maxhomozygousloss default
Purecn maxhomozygousloss
5.8 years ago twtoal ▴ 10
0
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1
reply
1.0k
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Copy ratio close to but not exactly 1
PureCN CopyRatio
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by ▴ 10
0
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1
reply
1.3k
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Comment: C: Assigning DUP/DEL p-value to CNV segment
6.0 years ago twtoal ▴ 10
0
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3
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1.3k
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Assigning DUP/DEL p-value to CNV segment
PureCN
6.0 years ago twtoal ▴ 10
0
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1
reply
1.2k
views
Copy ratio threshold for calling actual CNV
PureCN copy-ratio threshold
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by ▴ 10
0
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2
replies
1.0k
views
Mutation Burden file and manual curation
purecn mutation_burden manual_curation
6.0 years ago twtoal ▴ 10
0
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0
replies
1.0k
views
Answer: A: Mutation Burden file and manual curation
6.0 years ago twtoal ▴ 10
0
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1
reply
1.2k
views
PureCN Solution Heatmap values
PureCN heatmap likelihoods
6.0 years ago twtoal ▴ 10
0
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0
replies
1.3k
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Comment: C: CNV in Normal Samples?
6.0 years ago twtoal ▴ 10
0
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2
replies
1.3k
views
CNV in Normal Samples?
PureCN Germline Normal CNV
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by ▴ 10
1
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1
reply
988
views
PureCN recover optimum solution
PureCN Optimum_solution
updated 6.1 years ago by ▴ 130 • written 6.1 years ago by ▴ 10
0
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1
reply
877
views
PureCN PureCN.R --rds option recreate all output files?
PureCN --rds
updated 6.1 years ago by ▴ 130 • written 6.1 years ago by ▴ 10
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1
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1.2k
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Comment: C: PureCN Manual Curation .rds file
6.1 years ago twtoal ▴ 10
1
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3
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1.2k
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PureCN Manual Curation .rds file
PureCN rds_file manual_curation
updated 6.1 years ago by ▴ 130 • written 6.1 years ago by ▴ 10
0
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0
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2.0k
views
Comment: C: Is mean adjusted for purity?
6.1 years ago twtoal ▴ 10
0
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0
replies
1.6k
views
Comment: C: PureCN optimum solution vs heat map
6.1 years ago twtoal ▴ 10
0
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1
reply
2.0k
views
Comment: C: Is mean adjusted for purity?
6.4 years ago • updated 6.1 years ago twtoal ▴ 10
0
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2
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1.6k
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Comment: C: PureCN optimum solution vs heat map
6.1 years ago twtoal ▴ 10
0
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4
replies
1.6k
views
PureCN optimum solution vs heat map
PureCN Solution Heatmap
updated 6.1 years ago by ▴ 130 • written 6.1 years ago by ▴ 10
0
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1
reply
2.0k
views
Comment: C: Is mean adjusted for purity?
6.4 years ago • updated 6.1 years ago twtoal ▴ 10
0
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0
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2.0k
views
Answer: A: PureCN: Error in plot.window(...) : need finite 'ylim' values
6.1 years ago twtoal ▴ 10
0
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3
replies
2.0k
views
PureCN: Error in plot.window(...) : need finite 'ylim' values
PureCN
6.3 years ago • updated 6.1 years ago twtoal ▴ 10
0
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1
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2.0k
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Comment: C: PureCN: Error in plot.window(...) : need finite 'ylim' values
6.3 years ago twtoal ▴ 10
0
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1
reply
1.3k
views
PureCN Error in xg[1, ] : incorrect number of dimensions
PureCN
6.3 years ago twtoal ▴ 10
0
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1
reply
2.0k
views
Comment: C: Unable to find solution: low coverage
6.4 years ago twtoal ▴ 10
0
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5
replies
2.0k
views
Is mean adjusted for purity?
PureCN mean ratio
updated 6.4 years ago by ▴ 130 • written 6.4 years ago by ▴ 10
0
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2
replies
2.0k
views
Comment: C: Unable to find solution: low coverage
6.4 years ago twtoal ▴ 10
3
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5
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1.8k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 6.4 years ago by • 0 • written 6.5 years ago by ▴ 10
0
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2
replies
2.0k
views
Comment: C: Unable to find solution: low coverage
6.4 years ago twtoal ▴ 10
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