Bioconductor Zinbwave

Showing : zinbwave • reset

votes

replies

1.9k

views

edgeR DESeq2 single-cell scRNAseq zinbwave

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by vincent.croset ▴ 20

votes

replies

2.3k

views

DESeq2 ZINB zinbwave deseq

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by rowcyclecamp • 0

votes

replies

902

views

zinbwave PCA

4.5 years ago Assa Yeroslaviz ★ 1.5k

vote

replies

2.5k

views

scRNA zinbwave batch IntegratedData

updated 4.6 years ago by davide risso ▴ 980 • written 4.6 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

1.9k

views

deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by vincent.croset ▴ 20

votes

replies

3.6k

views

cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 4.8 years ago by davide risso ▴ 980 • written 4.8 years ago by Wagaa ▴ 10

votes

replies

2.8k

views

zinbwave deseq2 vegan

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by zcbthug • 0

votes

1.4k

views

deseq2 glm zinbwave ruvseq

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Jakub ▴ 50

8 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All