Bioconductor Xvector

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IRanges XVector AtomicList

written 2.1 years ago by Pierre-Luc Germain ▴ 20

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3.0k

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XVector docker Install

2.6 years ago RobKo ▴ 10

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732

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XVector

updated 3.4 years ago by Martin Morgan 25k • written 3.4 years ago by robmaz77 ▴ 20

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2.1k

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S4Vectors IRanges XVector GenomicRanges scran

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Momo • 0

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2.1k

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bioconductor iranges s4vectors xvector r 3.3.2

updated 5.9 years ago by becker.gabriel ▴ 10 • written 5.9 years ago by chokoiboko • 0

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1.3k

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variantannotation xvector iranges

6.1 years ago Vivek.b ▴ 100

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4.5k

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subseq Xvector dnastringset

updated 7.1 years ago by Hervé Pagès 16k • written 7.1 years ago by Sophie • 0

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880

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xvector

7.2 years ago Charles Plessy ▴ 180

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2.2k

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software error gcrma Xvector iranges

7.9 years ago gary_smith • 0

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1.2k

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Network Cancer IRanges XVector

9.8 years ago Hervé Pagès 16k

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1.3k

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Cancer XVector

9.8 years ago Hervé Pagès 16k

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2.2k

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 10.6 years ago by Michael Lawrence ★ 11k • written 10.6 years ago by heyi xiao ▴ 360

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4.6k

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XVector XVector

updated 11.0 years ago by Hervé Pagès 16k • written 11.0 years ago by Pengcheng Yang ▴ 60

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

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Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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