Bioconductor XcmsSet

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xcms xcmsset intensity

6.2 years ago cpataki • 0

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source code xcms m/z groupval xcmsSet

updated 8.1 years ago by Johannes Rainer ★ 2.1k • written 8.1 years ago by juniormbarga • 0

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Comment: ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly A by nereaherrera23 • 0

Hello, I am stuck in the same error (meth and unmeth dont pair correctly), did you solved the issue? Thank you Nerea

Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

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Filtering low variance genes for WGCNA

A: Filtering low variance genes for WGCNA

Answer: bioconductor packages on bioconda

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Scholar to James W. MacDonald 67k